Analysis of interatomic Contacts of Structural Units in PDB entry:
5C77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C77 entry

There are 2 chains in PDB entry 5C77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2SER 204
B
 LYS 2SER 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5C77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 28Right-handed alpha
Helix 2
AA2
A
42 46Right-handed 310
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
64 68Right-handed 310
Helix 5
AA5
A
92 98Right-handed 310
Helix 6
AA6
A
116 124Right-handed alpha
Helix 7
AA7
A
139 152Right-handed alpha
Helix 8
AA8
A
156 160Right-handed 310
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
B
13 28Right-handed alpha
Helix 11
AB2
B
42 46Right-handed 310
Helix 12
AB3
B
47 53Right-handed alpha
Helix 13
AB4
B
61 63Right-handed 310
Helix 14
AB5
B
64 69Right-handed alpha
Helix 15
AB6
B
92 98Right-handed 310
Helix 16
AB7
B
115 124Right-handed alpha
Helix 17
AB8
B
139 152Right-handed alpha
Helix 18
AB9
B
156 160Right-handed 310
Helix 19
AC1
B
195 204Right-handed alpha
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There are 6 sheets in PDB entry 5C77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
32 35parallel
Strand 3
A
3 6parallel
Strand 4
A
101 104parallel
Strand 5
A
80 83parallel
Strand 6
A
128 131parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
114 115anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
181 183anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
175 177anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
3 6parallel
Strand 3
B
101 104parallel
Strand 4
B
80 83parallel
Strand 5
B
128 131parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
181 183anti-parallel
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