Analysis of interatomic Contacts of Structural Units in PDB entry:
5C7I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C7I entry

There are 4 chains in PDB entry 5C7I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
O
 GLU 107SER 255
O
 THR 257GLU 439
R
 GLU 107SER 255
R
 THR 257GLU 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5C7I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
O
116 130Right-handed alpha
Helix 2
AA2
O
142 152Right-handed alpha
Helix 3
AA3
O
184 188Right-handed 310
Helix 4
AA4
O
189 194Right-handed 310
Helix 5
AA5
O
207 217Right-handed alpha
Helix 6
AA6
O
239 243Right-handed 310
Helix 7
AA7
O
255 272Right-handed alpha
Helix 8
AA8
O
300 304Right-handed 310
Helix 9
AA9
O
320 325Right-handed alpha
Helix 10
AB1
O
326 329Right-handed 310
Helix 11
AB2
O
358 372Right-handed alpha
Helix 12
AB3
O
386 391Right-handed 310
Helix 13
AB4
O
421 438Right-handed alpha
Helix 14
AB5
R
116 130Right-handed alpha
Helix 15
AB6
R
142 152Right-handed alpha
Helix 16
AB7
R
184 188Right-handed 310
Helix 17
AB8
R
189 194Right-handed 310
Helix 18
AB9
R
207 217Right-handed alpha
Helix 19
AC1
R
239 243Right-handed 310
Helix 20
AC2
R
255 272Right-handed alpha
Helix 21
AC3
R
300 304Right-handed 310
Helix 22
AC4
R
320 325Right-handed alpha
Helix 23
AC5
R
326 329Right-handed 310
Helix 24
AC6
R
358 372Right-handed alpha
Helix 25
AC7
R
386 391Right-handed 310
Helix 26
AC8
R
421 438Right-handed alpha
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There are 6 sheets in PDB entry 5C7I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
163 166first strand
Strand 2
O
169 172anti-parallel
Strand 3
O
175 180anti-parallel
Strand 4
O
132 137parallel
Strand 5
O
109 113parallel
Strand 6
O
197 200parallel
Strand 7
O
221 224parallel
Strand 8
O
250 252parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
311 314first strand
Strand 2
O
332 339anti-parallel
Strand 3
O
274 284parallel
Strand 4
O
345 353anti-parallel
Strand 5
O
411 418anti-parallel
Strand 6
O
397 400anti-parallel
Strand 7
O
378 381parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
311 314first strand
Strand 2
O
332 339anti-parallel
Strand 3
O
274 284parallel
Strand 4
O
345 353anti-parallel
Strand 5
O
411 418anti-parallel
Strand 6
O
405 408anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
163 166first strand
Strand 2
R
169 172anti-parallel
Strand 3
R
175 180anti-parallel
Strand 4
R
132 137parallel
Strand 5
R
109 113parallel
Strand 6
R
197 200parallel
Strand 7
R
221 224parallel
Strand 8
R
250 252parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
311 314first strand
Strand 2
R
332 339anti-parallel
Strand 3
R
274 284parallel
Strand 4
R
345 353anti-parallel
Strand 5
R
411 418anti-parallel
Strand 6
R
397 400anti-parallel
Strand 7
R
378 381parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
311 314first strand
Strand 2
R
332 339anti-parallel
Strand 3
R
274 284parallel
Strand 4
R
345 353anti-parallel
Strand 5
R
411 418anti-parallel
Strand 6
R
405 408anti-parallel
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