Analysis of interatomic Contacts of Structural Units in PDB entry:
5C7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C7J entry

There are 4 chains in PDB entry 5C7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 520GLY 895
B
 ARG 520PHE 896
C
 HIS -15LEU 73
D
 HIS -15LEU 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5C7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
521 533Right-handed alpha
Helix 2
AA2
A
548 550Right-handed 310
Helix 3
AA3
A
551 562Right-handed alpha
Helix 4
AA4
A
565 571Right-handed 310
Helix 5
AA5
A
584 601Right-handed alpha
Helix 6
AA6
A
602 606Right-handed 310
Helix 7
AA7
A
623 628Right-handed alpha
Helix 8
AA8
A
630 648Right-handed alpha
Helix 9
AA9
A
657 665Right-handed alpha
Helix 10
AB1
A
673 678Right-handed alpha
Helix 11
AB2
A
678 691Right-handed alpha
Helix 12
AB3
A
692 697Right-handed 310
Helix 13
AB4
A
718 722Right-handed 310
Helix 14
AB5
A
725 727Right-handed 310
Helix 15
AB6
A
728 742Right-handed alpha
Helix 16
AB7
A
745 760Right-handed alpha
Helix 17
AB8
A
761 766Right-handed alpha
Helix 18
AB9
A
769 778Right-handed alpha
Helix 19
AC1
A
784 791Right-handed alpha
Helix 20
AC2
A
802 815Right-handed alpha
Helix 21
AC3
A
816 829Right-handed alpha
Helix 22
AC4
A
878 895Right-handed alpha
Helix 23
AC5
B
521 533Right-handed alpha
Helix 24
AC6
B
548 550Right-handed 310
Helix 25
AC7
B
551 562Right-handed alpha
Helix 26
AC8
B
565 571Right-handed 310
Helix 27
AC9
B
584 601Right-handed alpha
Helix 28
AD1
B
602 606Right-handed 310
Helix 29
AD2
B
623 628Right-handed alpha
Helix 30
AD3
B
630 648Right-handed alpha
Helix 31
AD4
B
657 665Right-handed alpha
Helix 32
AD5
B
673 678Right-handed alpha
Helix 33
AD6
B
678 691Right-handed alpha
Helix 34
AD7
B
692 697Right-handed 310
Helix 35
AD8
B
718 722Right-handed 310
Helix 36
AD9
B
725 727Right-handed 310
Helix 37
AE1
B
728 742Right-handed alpha
Helix 38
AE2
B
745 760Right-handed alpha
Helix 39
AE3
B
761 766Right-handed alpha
Helix 40
AE4
B
769 778Right-handed alpha
Helix 41
AE5
B
784 791Right-handed alpha
Helix 42
AE6
B
802 815Right-handed alpha
Helix 43
AE7
B
816 828Right-handed alpha
Helix 44
AE8
B
878 895Right-handed alpha
Helix 45
AE9
C
-14 -6Right-handed alpha
Helix 46
AF1
C
22 35Right-handed alpha
Helix 47
AF2
C
37 41Right-handed 310
Helix 48
AF3
D
-14 -6Right-handed alpha
Helix 49
AF4
D
22 35Right-handed alpha
Helix 50
AF5
D
37 41Right-handed 310
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There are 10 sheets in PDB entry 5C7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 547first strand
Strand 2
A
572 577parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 610first strand
Strand 2
A
618 620anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 706first strand
Strand 2
A
709 714anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 795first strand
Strand 2
A
850 853parallel
Strand 3
A
870 872parallel
Strand 4
A
863 865anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 547first strand
Strand 2
B
572 577parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
608 610first strand
Strand 2
B
618 620anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
701 706first strand
Strand 2
B
709 714anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
792 795first strand
Strand 2
B
850 853parallel
Strand 3
B
870 872parallel
Strand 4
B
863 865anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 15first strand
Strand 2
C
3 7anti-parallel
Strand 3
C
67 70parallel
Strand 4
C
42 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 15first strand
Strand 2
D
3 7anti-parallel
Strand 3
D
67 70parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il