Analysis of interatomic Contacts of Structural Units in PDB entry:
5C7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C7M entry

There are 3 chains in PDB entry 5C7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 526GLY 899
B
 MET 1ARG 73
C
 MET 1ARG 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5C7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
527 543Right-handed alpha
Helix 2
AA2
A
556 568Right-handed alpha
Helix 3
AA3
A
569 574Right-handed alpha
Helix 4
AA4
A
592 605Right-handed alpha
Helix 5
AA5
A
606 610Right-handed 310
Helix 6
AA6
A
627 631Right-handed 310
Helix 7
AA7
A
633 652Right-handed alpha
Helix 8
AA8
A
660 668Right-handed alpha
Helix 9
AA9
A
673 681Right-handed alpha
Helix 10
AB1
A
681 694Right-handed alpha
Helix 11
AB2
A
695 700Right-handed alpha
Helix 12
AB3
A
723 727Right-handed 310
Helix 13
AB4
A
733 746Right-handed alpha
Helix 14
AB5
A
750 765Right-handed alpha
Helix 15
AB6
A
766 771Right-handed 310
Helix 16
AB7
A
774 784Right-handed alpha
Helix 17
AB8
A
789 796Right-handed alpha
Helix 18
AB9
A
806 819Right-handed alpha
Helix 19
AC1
A
820 833Right-handed alpha
Helix 20
AC2
A
841 845Right-handed 310
Helix 21
AC3
A
882 897Right-handed alpha
Helix 22
AC4
B
22 35Right-handed alpha
Helix 23
AC5
C
22 34Right-handed alpha
Helix 24
AC6
C
55 60Right-handed alpha
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There are 6 sheets in PDB entry 5C7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 551first strand
Strand 2
A
576 580parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
623 624anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
706 709first strand
Strand 2
A
716 719anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 800first strand
Strand 2
A
854 858parallel
Strand 3
A
874 877parallel
Strand 4
A
867 869anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 44anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 6anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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