Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C8A entry

There are 4 chains in PDB entry 5C8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 81LEU 274
B
 LEU 83LEU 276
C
 PRO 80LEU 274
D
 GLU 81LEU 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5C8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 93Right-handed alpha
Helix 2
AA2
A
95 119Right-handed alpha
Helix 3
AA3
A
119 133Right-handed alpha
Helix 4
AA4
A
137 159Right-handed alpha
Helix 5
AA5
A
178 190Right-handed alpha
Helix 6
AA6
A
203 214Right-handed alpha
Helix 7
AA7
A
226 231Right-handed alpha
Helix 8
AA8
A
252 260Right-handed alpha
Helix 9
AA9
A
267 274Right-handed alpha
Helix 10
AB1
B
84 93Right-handed alpha
Helix 11
AB2
B
95 119Right-handed alpha
Helix 12
AB3
B
119 133Right-handed alpha
Helix 13
AB4
B
137 159Right-handed alpha
Helix 14
AB5
B
178 191Right-handed alpha
Helix 15
AB6
B
203 214Right-handed alpha
Helix 16
AB7
B
226 231Right-handed alpha
Helix 17
AB8
B
252 260Right-handed alpha
Helix 18
AB9
B
269 276Right-handed alpha
Helix 19
AC1
C
81 93Right-handed alpha
Helix 20
AC2
C
95 119Right-handed alpha
Helix 21
AC3
C
119 133Right-handed alpha
Helix 22
AC4
C
137 159Right-handed alpha
Helix 23
AC5
C
178 190Right-handed alpha
Helix 24
AC6
C
203 214Right-handed alpha
Helix 25
AC7
C
226 231Right-handed alpha
Helix 26
AC8
C
252 260Right-handed alpha
Helix 27
AC9
C
266 273Right-handed alpha
Helix 28
AD1
D
82 93Right-handed alpha
Helix 29
AD2
D
95 119Right-handed alpha
Helix 30
AD3
D
119 133Right-handed alpha
Helix 31
AD4
D
137 160Right-handed alpha
Helix 32
AD5
D
178 191Right-handed alpha
Helix 33
AD6
D
203 215Right-handed alpha
Helix 34
AD7
D
226 231Right-handed alpha
Helix 35
AD8
D
252 260Right-handed alpha
Helix 36
AD9
D
266 274Right-handed alpha
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There are 4 sheets in PDB entry 5C8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
167 170parallel
Strand 3
A
218 222parallel
Strand 4
A
243 247parallel
Strand 5
A
262 263parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
167 170parallel
Strand 3
B
218 222parallel
Strand 4
B
243 247parallel
Strand 5
B
262 263parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 197first strand
Strand 2
C
167 170parallel
Strand 3
C
218 222parallel
Strand 4
C
243 247parallel
Strand 5
C
262 263parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
195 197first strand
Strand 2
D
167 170parallel
Strand 3
D
218 222parallel
Strand 4
D
243 247parallel
Strand 5
D
262 263parallel
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