Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C8B entry

There is 1 chain in PDB entry 5C8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1ALA 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5C8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 29Right-handed alpha
Helix 2
AA2
B
67 76Right-handed alpha
Helix 3
AA3
B
93 103Right-handed alpha
Helix 4
AA4
B
108 112Right-handed 310
Helix 5
AA5
B
114 119Right-handed alpha
Helix 6
AA6
B
124 130Right-handed alpha
Helix 7
AA7
B
167 184Right-handed alpha
Helix 8
AA8
B
193 197Right-handed 310
Helix 9
AA9
B
208 224Right-handed alpha
Helix 10
AB1
B
236 246Right-handed alpha
Helix 11
AB2
B
254 265Right-handed alpha
Helix 12
AB3
B
268 278Right-handed alpha
Helix 13
AB4
B
311 326Right-handed alpha
Helix 14
AB5
B
328 334Right-handed alpha
Helix 15
AB6
B
351 355Right-handed 310
Helix 16
AB7
B
357 371Right-handed alpha
Helix 17
AB8
B
379 383Right-handed alpha
Helix 18
AB9
B
388 396Right-handed alpha
Helix 19
AC1
B
397 403Right-handed 310
Helix 20
AC2
B
407 416Right-handed alpha
Helix 21
AC3
B
417 433Right-handed alpha
Helix 22
AC4
B
434 438Right-handed 310
Helix 23
AC5
B
467 470Right-handed 310
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There are 6 sheets in PDB entry 5C8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
36 39parallel
Strand 3
B
79 85parallel
Strand 4
B
188 192parallel
Strand 5
B
228 231parallel
Strand 6
B
249 252parallel
Strand 7
B
282 284parallel
Strand 8
B
374 378parallel
Strand 9
B
6 9parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
57 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
160 162anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 145first strand
Strand 2
B
148 153anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
345 346anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 444first strand
Strand 2
B
450 455anti-parallel
Strand 3
B
460 465anti-parallel
Strand 4
B
480 486anti-parallel
Strand 5
B
489 493anti-parallel
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