Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C8D entry

There are 6 chains in PDB entry 5C8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 48	TRP 275
B	VAL 50	LEU 276
C	LEU 53	TRP 275
D	SER 4	LEU 276
E	SER 4	GLU 283
F	GLY 5	ASP 157

There are107 helices in PDB entry 5C8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	61	Right-handed alpha
Helix 2	AA2	A	71	75	Right-handed alpha
Helix 3	AA3	A	79	81	Right-handed 310
Helix 4	AA4	A	82	93	Right-handed alpha
Helix 5	AA5	A	95	119	Right-handed alpha
Helix 6	AA6	A	119	133	Right-handed alpha
Helix 7	AA7	A	137	159	Right-handed alpha
Helix 8	AA8	A	178	191	Right-handed alpha
Helix 9	AA9	A	203	214	Right-handed alpha
Helix 10	AB1	A	226	231	Right-handed alpha
Helix 11	AB2	A	252	260	Right-handed alpha
Helix 12	AB3	A	266	275	Right-handed alpha
Helix 13	AB4	B	51	59	Right-handed alpha
Helix 14	AB5	B	67	75	Right-handed alpha
Helix 15	AB6	B	79	81	Right-handed 310
Helix 16	AB7	B	82	93	Right-handed alpha
Helix 17	AB8	B	95	119	Right-handed alpha
Helix 18	AB9	B	119	133	Right-handed alpha
Helix 19	AC1	B	137	159	Right-handed alpha
Helix 20	AC2	B	178	191	Right-handed alpha
Helix 21	AC3	B	203	214	Right-handed alpha
Helix 22	AC4	B	226	231	Right-handed alpha
Helix 23	AC5	B	252	260	Right-handed alpha
Helix 24	AC6	B	266	276	Right-handed alpha
Helix 25	AC7	C	54	62	Right-handed alpha
Helix 26	AC8	C	65	75	Right-handed alpha
Helix 27	AC9	C	79	81	Right-handed 310
Helix 28	AD1	C	82	93	Right-handed alpha
Helix 29	AD2	C	95	111	Right-handed alpha
Helix 30	AD3	C	111	119	Right-handed alpha
Helix 31	AD4	C	119	133	Right-handed alpha
Helix 32	AD5	C	137	159	Right-handed alpha
Helix 33	AD6	C	178	191	Right-handed alpha
Helix 34	AD7	C	203	214	Right-handed alpha
Helix 35	AD8	C	226	231	Right-handed alpha
Helix 36	AD9	C	252	260	Right-handed alpha
Helix 37	AE1	C	266	275	Right-handed alpha
Helix 38	AE2	D	9	17	Right-handed alpha
Helix 39	AE3	D	19	31	Right-handed alpha
Helix 40	AE4	D	47	62	Right-handed alpha
Helix 41	AE5	D	65	75	Right-handed alpha
Helix 42	AE6	D	79	93	Right-handed alpha
Helix 43	AE7	D	95	119	Right-handed alpha
Helix 44	AE8	D	119	133	Right-handed alpha
Helix 45	AE9	D	137	159	Right-handed alpha
Helix 46	AF1	D	178	191	Right-handed alpha
Helix 47	AF2	D	203	214	Right-handed alpha
Helix 48	AF3	D	226	231	Right-handed alpha
Helix 49	AF4	D	252	260	Right-handed alpha
Helix 50	AF5	D	266	276	Right-handed alpha
Helix 51	AF6	E	8	17	Right-handed alpha
Helix 52	AF7	E	19	31	Right-handed alpha
Helix 53	AF8	E	46	62	Right-handed alpha
Helix 54	AF9	E	65	76	Right-handed alpha
Helix 55	AG1	E	79	81	Right-handed 310
Helix 56	AG2	E	82	93	Right-handed alpha
Helix 57	AG3	E	95	119	Right-handed alpha
Helix 58	AG4	E	119	133	Right-handed alpha
Helix 59	AG5	E	137	159	Right-handed alpha
Helix 60	AG6	E	178	191	Right-handed alpha
Helix 61	AG7	E	203	214	Right-handed alpha
Helix 62	AG8	E	226	231	Right-handed alpha
Helix 63	AG9	E	252	260	Right-handed alpha
Helix 64	AH1	E	269	276	Right-handed alpha
Helix 65	AH2	F	9	16	Right-handed alpha
Helix 66	AH3	F	19	31	Right-handed alpha
Helix 67	AH4	F	46	62	Right-handed alpha
Helix 68	AH5	F	65	77	Right-handed alpha
Helix 69	AH6	F	79	81	Right-handed 310
Helix 70	AH7	F	82	93	Right-handed alpha
Helix 71	AH8	F	95	119	Right-handed alpha
Helix 72	AH9	F	119	133	Right-handed alpha
Helix 73	AI1	F	137	159	Right-handed alpha
Helix 74	AI2	F	178	191	Right-handed alpha
Helix 75	AI3	F	203	214	Right-handed alpha
Helix 76	AI4	F	226	231	Right-handed alpha
Helix 77	AI5	F	252	260	Right-handed alpha
Helix 78	AI6	F	266	276	Right-handed alpha
Helix 79	AI7	G	8	16	Right-handed alpha
Helix 80	AI8	G	19	31	Right-handed alpha
Helix 81	AI9	G	46	62	Right-handed alpha
Helix 82	AJ1	G	65	75	Right-handed alpha
Helix 83	AJ2	G	79	93	Right-handed alpha
Helix 84	AJ3	G	95	111	Right-handed alpha
Helix 85	AJ4	G	111	119	Right-handed alpha
Helix 86	AJ5	G	119	133	Right-handed alpha
Helix 87	AJ6	G	137	159	Right-handed alpha
Helix 88	AJ7	G	178	191	Right-handed alpha
Helix 89	AJ8	G	203	214	Right-handed alpha
Helix 90	AJ9	G	226	231	Right-handed alpha
Helix 91	AK1	G	252	260	Right-handed alpha
Helix 92	AK2	G	266	276	Right-handed alpha
Helix 93	AK3	H	9	17	Right-handed alpha
Helix 94	AK4	H	19	31	Right-handed alpha
Helix 95	AK5	H	46	62	Right-handed alpha
Helix 96	AK6	H	65	75	Right-handed alpha
Helix 97	AK7	H	79	81	Right-handed 310
Helix 98	AK8	H	82	93	Right-handed alpha
Helix 99	AK9	H	95	111	Right-handed alpha
Helix 100	AL1	H	111	119	Right-handed alpha
Helix 101	AL2	H	119	133	Right-handed alpha
Helix 102	AL3	H	137	159	Right-handed alpha
Helix 103	AL4	H	178	191	Right-handed alpha
Helix 104	AL5	H	203	214	Right-handed alpha
Helix 105	AL6	H	226	231	Right-handed alpha
Helix 106	AL7	H	252	260	Right-handed alpha
Helix 107	AL8	H	266	276	Right-handed alpha

There are 12 sheets in PDB entry 5C8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	167	170	parallel
Strand 3	A	218	222	parallel
Strand 4	A	244	247	parallel
Strand 5	A	262	263	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	167	170	parallel
Strand 3	B	218	222	parallel
Strand 4	B	244	247	parallel
Strand 5	B	262	263	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	167	170	parallel
Strand 3	C	218	222	parallel
Strand 4	C	244	247	parallel
Strand 5	C	262	263	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	43	46	anti-parallel
Strand 3	D	36	37	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	167	170	parallel
Strand 3	D	218	222	parallel
Strand 4	D	244	247	parallel
Strand 5	D	262	263	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	43	44	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	197	first strand
Strand 2	E	167	170	parallel
Strand 3	E	218	222	parallel
Strand 4	E	243	247	parallel
Strand 5	E	262	263	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	43	45	anti-parallel
Strand 3	F	36	37	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	195	197	first strand
Strand 2	F	167	170	parallel
Strand 3	F	218	222	parallel
Strand 4	F	244	247	parallel
Strand 5	F	262	263	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	195	197	first strand
Strand 2	G	167	170	parallel
Strand 3	G	218	222	parallel
Strand 4	G	244	247	parallel
Strand 5	G	262	263	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	8	first strand
Strand 2	H	44	45	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	195	199	first strand
Strand 2	H	167	170	parallel
Strand 3	H	218	222	parallel
Strand 4	H	244	247	parallel
Strand 5	H	262	263	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8D