Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C8F entry

There is 1 chain in PDB entry 5C8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5ARG 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5C8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
19 31Right-handed alpha
Helix 3
AA3
A
47 62Right-handed alpha
Helix 4
AA4
A
65 75Right-handed alpha
Helix 5
AA5
A
79 81Right-handed 310
Helix 6
AA6
A
82 94Right-handed alpha
Helix 7
AA7
A
95 110Right-handed alpha
Helix 8
AA8
A
111 119Right-handed alpha
Helix 9
AA9
A
119 133Right-handed alpha
Helix 10
AB1
A
137 159Right-handed alpha
Helix 11
AB2
A
178 191Right-handed alpha
Helix 12
AB3
A
203 215Right-handed alpha
Helix 13
AB4
A
226 232Right-handed alpha
Helix 14
AB5
A
252 260Right-handed alpha
Helix 15
AB6
A
266 275Right-handed alpha
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There are 2 sheets in PDB entry 5C8F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
36 37anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
167 170parallel
Strand 3
A
218 222parallel
Strand 4
A
243 247parallel
Strand 5
A
262 263parallel
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