Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C8J entry

There are 6 chains in PDB entry 5C8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	LYS 232
B	ASP 2	CYS 215
C	SER 3	CYS 234
D	ASP 2	CYS 215
E	GLU 4	SER 233
F	ASP 2	VAL 206

There are 56 helices in PDB entry 5C8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	94	Right-handed 310
Helix 2	AA2	A	106	111	Right-handed alpha
Helix 3	AA3	A	174	176	Right-handed 310
Helix 4	AA4	A	205	207	Right-handed 310
Helix 5	AA5	B	80	84	Right-handed 310
Helix 6	AA6	B	122	127	Right-handed alpha
Helix 7	AA7	B	184	188	Right-handed alpha
Helix 8	AA8	C	90	94	Right-handed 310
Helix 9	AA9	C	106	111	Right-handed alpha
Helix 10	AB1	C	174	176	Right-handed 310
Helix 11	AB2	C	205	210	Right-handed alpha
Helix 12	AB3	D	80	84	Right-handed 310
Helix 13	AB4	D	122	127	Right-handed alpha
Helix 14	AB5	D	184	188	Right-handed alpha
Helix 15	AB6	E	90	94	Right-handed 310
Helix 16	AB7	E	106	111	Right-handed alpha
Helix 17	AB8	E	174	176	Right-handed 310
Helix 18	AB9	E	206	211	Right-handed alpha
Helix 19	AC1	F	80	84	Right-handed 310
Helix 20	AC2	F	122	127	Right-handed alpha
Helix 21	AC3	F	184	188	Right-handed alpha
Helix 22	AC4	G	90	94	Right-handed 310
Helix 23	AC5	G	106	111	Right-handed alpha
Helix 24	AC6	G	174	176	Right-handed 310
Helix 25	AC7	G	205	207	Right-handed 310
Helix 26	AC8	H	80	84	Right-handed 310
Helix 27	AC9	H	122	127	Right-handed alpha
Helix 28	AD1	H	184	188	Right-handed alpha
Helix 29	AD2	I	6	23	Right-handed alpha
Helix 30	AD3	I	25	45	Right-handed alpha
Helix 31	AD4	I	103	122	Right-handed alpha
Helix 32	AD5	I	125	131	Right-handed alpha
Helix 33	AD6	I	143	148	Right-handed alpha
Helix 34	AD7	I	149	162	Right-handed alpha
Helix 35	AD8	I	175	193	Right-handed alpha
Helix 36	AD9	J	6	23	Right-handed alpha
Helix 37	AE1	J	25	43	Right-handed alpha
Helix 38	AE2	J	103	122	Right-handed alpha
Helix 39	AE3	J	125	131	Right-handed alpha
Helix 40	AE4	J	143	148	Right-handed alpha
Helix 41	AE5	J	149	162	Right-handed alpha
Helix 42	AE6	J	175	193	Right-handed alpha
Helix 43	AE7	K	6	23	Right-handed alpha
Helix 44	AE8	K	25	43	Right-handed alpha
Helix 45	AE9	K	103	122	Right-handed alpha
Helix 46	AF1	K	125	131	Right-handed alpha
Helix 47	AF2	K	143	148	Right-handed alpha
Helix 48	AF3	K	149	162	Right-handed alpha
Helix 49	AF4	K	175	193	Right-handed alpha
Helix 50	AF5	L	6	23	Right-handed alpha
Helix 51	AF6	L	25	43	Right-handed alpha
Helix 52	AF7	L	99	122	Right-handed alpha
Helix 53	AF8	L	125	131	Right-handed alpha
Helix 54	AF9	L	143	148	Right-handed alpha
Helix 55	AG1	L	149	162	Right-handed alpha
Helix 56	AG2	L	175	193	Right-handed alpha

There are 41 sheets in PDB entry 5C8J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	10	first strand
Strand 2	A	20	28	anti-parallel
Strand 3	A	81	87	anti-parallel
Strand 4	A	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	125	129	parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	37	42	anti-parallel
Strand 5	A	48	55	anti-parallel
Strand 6	A	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	125	129	parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	118	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	153	163	anti-parallel
Strand 3	A	194	203	anti-parallel
Strand 4	A	182	183	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	153	163	anti-parallel
Strand 3	A	194	203	anti-parallel
Strand 4	A	187	188	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	223	228	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	65	68	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	103	107	parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	50	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	119	first strand
Strand 2	B	130	140	anti-parallel
Strand 3	B	174	183	anti-parallel
Strand 4	B	160	164	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	192	198	anti-parallel
Strand 3	B	206	211	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	21	28	anti-parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	125	129	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	48	55	anti-parallel
Strand 6	C	60	63	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	125	129	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	118	121	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	141	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	182	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	141	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	187	188	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	213	218	anti-parallel
Strand 3	C	224	228	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	65	68	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	14	first strand
Strand 2	D	103	107	parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	98	99	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	119	first strand
Strand 2	D	130	140	anti-parallel
Strand 3	D	174	183	anti-parallel
Strand 4	D	160	164	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	146	151	anti-parallel
Strand 3	D	192	198	anti-parallel
Strand 4	D	206	211	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	10	first strand
Strand 2	E	21	28	anti-parallel
Strand 3	E	81	86	anti-parallel
Strand 4	E	71	76	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	125	129	parallel
Strand 3	E	95	102	anti-parallel
Strand 4	E	37	42	anti-parallel
Strand 5	E	49	55	anti-parallel
Strand 6	E	60	63	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	125	129	parallel
Strand 3	E	95	102	anti-parallel
Strand 4	E	118	121	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	153	163	anti-parallel
Strand 3	E	194	203	anti-parallel
Strand 4	E	182	183	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	142	first strand
Strand 2	E	153	163	anti-parallel
Strand 3	E	194	203	anti-parallel
Strand 4	E	187	188	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	172	first strand
Strand 2	E	213	218	anti-parallel
Strand 3	E	223	228	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	8	first strand
Strand 2	F	20	26	anti-parallel
Strand 3	F	71	76	anti-parallel
Strand 4	F	65	68	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	14	first strand
Strand 2	F	103	107	parallel
Strand 3	F	86	91	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	160	164	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	151	first strand
Strand 2	F	192	198	anti-parallel
Strand 3	F	206	211	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	10	first strand
Strand 2	G	20	28	anti-parallel
Strand 3	G	81	87	anti-parallel
Strand 4	G	71	76	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	125	129	parallel
Strand 3	G	95	102	anti-parallel
Strand 4	G	37	42	anti-parallel
Strand 5	G	48	55	anti-parallel
Strand 6	G	60	63	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	14	15	first strand
Strand 2	G	125	129	parallel
Strand 3	G	95	102	anti-parallel
Strand 4	G	118	121	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	142	first strand
Strand 2	G	153	163	anti-parallel
Strand 3	G	194	203	anti-parallel
Strand 4	G	182	183	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	142	first strand
Strand 2	G	153	163	anti-parallel
Strand 3	G	194	203	anti-parallel
Strand 4	G	187	188	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	172	first strand
Strand 2	G	213	217	anti-parallel
Strand 3	G	224	228	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	8	first strand
Strand 2	H	20	26	anti-parallel
Strand 3	H	71	76	anti-parallel
Strand 4	H	65	68	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	14	first strand
Strand 2	H	103	107	parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	50	anti-parallel
Strand 6	H	54	55	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	119	first strand
Strand 2	H	130	140	anti-parallel
Strand 3	H	174	183	anti-parallel
Strand 4	H	160	164	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	151	first strand
Strand 2	H	192	198	anti-parallel
Strand 3	H	206	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8J