Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C8T entry

There are 4 chains in PDB entry 5C8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	ASP 131
B	ALA 1	ARG 525
C	GLY -1	ASP 131
D	ALA 1	ARG 525

There are 41 helices in PDB entry 5C8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	9	Right-handed 310
Helix 2	AA2	A	10	20	Right-handed alpha
Helix 3	AA3	A	22	33	Right-handed alpha
Helix 4	AA4	A	70	74	Right-handed alpha
Helix 5	AA5	A	74	80	Right-handed alpha
Helix 6	AA6	A	102	104	Right-handed 310
Helix 7	AA7	A	106	114	Right-handed alpha
Helix 8	AA8	B	30	32	Right-handed 310
Helix 9	AA9	B	75	82	Right-handed alpha
Helix 10	AB1	B	143	150	Right-handed 310
Helix 11	AB2	B	151	156	Right-handed alpha
Helix 12	AB3	B	158	175	Right-handed alpha
Helix 13	AB4	B	188	199	Right-handed alpha
Helix 14	AB5	B	245	248	Right-handed 310
Helix 15	AB6	B	252	261	Right-handed alpha
Helix 16	AB7	B	269	287	Right-handed alpha
Helix 17	AB8	B	301	325	Right-handed alpha
Helix 18	AB9	B	369	374	Right-handed alpha
Helix 19	AC1	B	432	437	Right-handed 310
Helix 20	AC2	B	484	504	Right-handed alpha
Helix 21	AC3	B	516	524	Right-handed 310
Helix 22	AC4	C	7	19	Right-handed alpha
Helix 23	AC5	C	22	33	Right-handed alpha
Helix 24	AC6	C	71	73	Right-handed 310
Helix 25	AC7	C	74	79	Right-handed alpha
Helix 26	AC8	C	102	105	Right-handed 310
Helix 27	AC9	C	106	114	Right-handed alpha
Helix 28	AD1	D	25	29	Right-handed 310
Helix 29	AD2	D	30	32	Right-handed 310
Helix 30	AD3	D	75	82	Right-handed alpha
Helix 31	AD4	D	143	148	Right-handed 310
Helix 32	AD5	D	149	155	Right-handed alpha
Helix 33	AD6	D	158	175	Right-handed alpha
Helix 34	AD7	D	187	199	Right-handed alpha
Helix 35	AD8	D	252	261	Right-handed alpha
Helix 36	AD9	D	269	287	Right-handed alpha
Helix 37	AE1	D	302	325	Right-handed alpha
Helix 38	AE2	D	369	374	Right-handed alpha
Helix 39	AE3	D	432	437	Right-handed 310
Helix 40	AE4	D	484	504	Right-handed alpha
Helix 41	AE5	D	515	525	Right-handed alpha

There are 17 sheets in PDB entry 5C8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	65	69	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	35	first strand
Strand 2	B	38	39	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	122	126	anti-parallel
Strand 3	B	131	135	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	104	111	anti-parallel
Strand 3	B	86	95	anti-parallel
Strand 4	B	182	185	parallel
Strand 5	B	240	243	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	216	218	anti-parallel
Strand 3	B	235	236	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	347	352	parallel
Strand 3	B	328	332	parallel
Strand 4	B	381	385	parallel
Strand 5	B	396	401	parallel
Strand 6	B	506	510	anti-parallel
Strand 7	B	440	441	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	418	420	anti-parallel
Strand 3	B	426	428	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	96	100	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	122	123	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	38	39	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	122	126	anti-parallel
Strand 3	D	131	135	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	86	96	anti-parallel
Strand 4	D	138	139	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	86	96	anti-parallel
Strand 4	D	182	185	parallel
Strand 5	D	240	243	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	216	218	anti-parallel
Strand 3	D	235	236	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	328	332	parallel
Strand 3	D	381	385	parallel
Strand 4	D	396	401	parallel
Strand 5	D	506	510	anti-parallel
Strand 6	D	440	441	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	418	420	anti-parallel
Strand 3	D	426	428	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	446	447	first strand
Strand 2	D	473	474	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8T