Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C8W entry

There are 6 chains in PDB entry 5C8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 150	THR 269
B	ALA 147	ARG 267
C	VAL 149	THR 269
D	VAL 149	ARG 267
E	ARG 150	ARG 268
F	LYS 151	GLU 182

There are 30 helices in PDB entry 5C8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	152	165	Right-handed alpha
Helix 2	AA2	A	168	172	Right-handed 310
Helix 3	AA3	A	173	184	Right-handed alpha
Helix 4	AA4	A	232	239	Right-handed alpha
Helix 5	AA5	A	259	267	Right-handed alpha
Helix 6	AA6	B	152	165	Right-handed alpha
Helix 7	AA7	B	168	172	Right-handed 310
Helix 8	AA8	B	173	184	Right-handed alpha
Helix 9	AA9	B	232	238	Right-handed alpha
Helix 10	AB1	B	259	267	Right-handed alpha
Helix 11	AB2	C	152	166	Right-handed alpha
Helix 12	AB3	C	168	172	Right-handed 310
Helix 13	AB4	C	173	184	Right-handed alpha
Helix 14	AB5	C	232	238	Right-handed alpha
Helix 15	AB6	C	259	267	Right-handed alpha
Helix 16	AB7	D	152	165	Right-handed alpha
Helix 17	AB8	D	168	172	Right-handed 310
Helix 18	AB9	D	173	184	Right-handed alpha
Helix 19	AC1	D	232	238	Right-handed alpha
Helix 20	AC2	D	259	267	Right-handed alpha
Helix 21	AC3	E	152	165	Right-handed alpha
Helix 22	AC4	E	168	172	Right-handed 310
Helix 23	AC5	E	173	184	Right-handed alpha
Helix 24	AC6	E	232	239	Right-handed alpha
Helix 25	AC7	E	259	267	Right-handed alpha
Helix 26	AC8	F	154	165	Right-handed alpha
Helix 27	AC9	F	168	172	Right-handed 310
Helix 28	AD1	F	173	184	Right-handed alpha
Helix 29	AD2	F	233	239	Right-handed alpha
Helix 30	AD3	F	259	268	Right-handed alpha

There are 12 sheets in PDB entry 5C8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	189	first strand
Strand 2	A	252	258	anti-parallel
Strand 3	A	204	210	anti-parallel
Strand 4	A	230	231	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	245	248	anti-parallel
Strand 3	A	213	217	anti-parallel
Strand 4	A	220	224	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	189	first strand
Strand 2	B	252	258	anti-parallel
Strand 3	B	204	210	anti-parallel
Strand 4	B	230	231	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	196	first strand
Strand 2	B	245	248	anti-parallel
Strand 3	B	213	217	anti-parallel
Strand 4	B	220	224	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	189	first strand
Strand 2	C	252	258	anti-parallel
Strand 3	C	204	210	anti-parallel
Strand 4	C	229	231	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	245	248	anti-parallel
Strand 3	C	213	217	anti-parallel
Strand 4	C	220	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	189	first strand
Strand 2	D	252	258	anti-parallel
Strand 3	D	204	210	anti-parallel
Strand 4	D	230	231	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	196	first strand
Strand 2	D	245	248	anti-parallel
Strand 3	D	213	217	anti-parallel
Strand 4	D	220	225	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	189	first strand
Strand 2	E	252	258	anti-parallel
Strand 3	E	204	210	anti-parallel
Strand 4	E	230	231	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	196	first strand
Strand 2	E	245	248	anti-parallel
Strand 3	E	213	217	anti-parallel
Strand 4	E	220	224	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	189	first strand
Strand 2	F	252	258	anti-parallel
Strand 3	F	204	210	anti-parallel
Strand 4	F	230	231	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	196	first strand
Strand 2	F	245	248	anti-parallel
Strand 3	F	213	217	anti-parallel
Strand 4	F	220	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C8W