Analysis of interatomic Contacts of Structural Units in PDB entry:
5C98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C98 entry

There are 2 chains in PDB entry 5C98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 23GLN 390
B
 ASP 23ASP 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5C98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 42Right-handed alpha
Helix 2
AA2
A
51 61Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
67 79Right-handed alpha
Helix 5
AA5
A
83 99Right-handed alpha
Helix 6
AA6
A
119 129Right-handed alpha
Helix 7
AA7
A
141 156Right-handed alpha
Helix 8
AA8
A
165 170Right-handed alpha
Helix 9
AA9
A
195 199Right-handed 310
Helix 10
AB1
A
241 244Right-handed 310
Helix 11
AB2
A
258 266Right-handed alpha
Helix 12
AB3
A
267 278Right-handed alpha
Helix 13
AB4
A
297 305Right-handed alpha
Helix 14
AB5
A
308 313Right-handed alpha
Helix 15
AB6
B
24 42Right-handed alpha
Helix 16
AB7
B
51 60Right-handed alpha
Helix 17
AB8
B
61 66Right-handed 310
Helix 18
AB9
B
67 79Right-handed alpha
Helix 19
AC1
B
83 99Right-handed alpha
Helix 20
AC2
B
119 129Right-handed alpha
Helix 21
AC3
B
141 156Right-handed alpha
Helix 22
AC4
B
165 170Right-handed alpha
Helix 23
AC5
B
195 199Right-handed 310
Helix 24
AC6
B
241 244Right-handed 310
Helix 25
AC7
B
258 266Right-handed alpha
Helix 26
AC8
B
267 278Right-handed alpha
Helix 27
AC9
B
297 305Right-handed alpha
Helix 28
AD1
B
308 313Right-handed alpha
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There are 6 sheets in PDB entry 5C98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
375 381anti-parallel
Strand 3
A
363 369anti-parallel
Strand 4
A
246 253anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
213 228anti-parallel
Strand 7
A
200 203anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
375 381anti-parallel
Strand 3
A
363 369anti-parallel
Strand 4
A
246 253anti-parallel
Strand 5
A
233 239anti-parallel
Strand 6
A
213 228anti-parallel
Strand 7
A
279 288anti-parallel
Strand 8
A
355 358parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
104 113parallel
Strand 3
A
178 186anti-parallel
Strand 4
A
329 337parallel
Strand 5
A
291 296anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
375 381anti-parallel
Strand 3
B
363 369anti-parallel
Strand 4
B
246 253anti-parallel
Strand 5
B
233 239anti-parallel
Strand 6
B
213 228anti-parallel
Strand 7
B
200 203anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
375 381anti-parallel
Strand 3
B
363 369anti-parallel
Strand 4
B
246 253anti-parallel
Strand 5
B
233 239anti-parallel
Strand 6
B
213 228anti-parallel
Strand 7
B
279 288anti-parallel
Strand 8
B
355 358parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 137first strand
Strand 2
B
104 113parallel
Strand 3
B
178 186anti-parallel
Strand 4
B
329 338parallel
Strand 5
B
290 296anti-parallel
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