Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C9A entry

There are 3 chains in PDB entry 5C9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LEU 297
B
 GLY 11GLN 323
C
 GLY 1GLN 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5C9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
75 78Right-handed 310
Helix 5
AA5
A
79 85Right-handed alpha
Helix 6
AA6
A
116 124Right-handed alpha
Helix 7
AA7
A
168 173Right-handed 310
Helix 8
AA8
A
215 219Right-handed 310
Helix 9
AA9
A
225 229Right-handed 310
Helix 10
AB1
B
35 39Right-handed 310
Helix 11
AB2
B
104 106Right-handed 310
Helix 12
AB3
B
125 129Right-handed 310
Helix 13
AB4
B
152 156Right-handed 310
Helix 14
AB5
B
158 167Right-handed alpha
Helix 15
AB6
B
216 221Right-handed alpha
Helix 16
AB7
B
222 226Right-handed 310
Helix 17
AB8
B
231 235Right-handed 310
Helix 18
AB9
B
240 247Right-handed 310
Helix 19
AC1
C
42 48Right-handed alpha
Helix 20
AC2
C
64 70Right-handed 310
Helix 21
AC3
C
94 98Right-handed 310
Helix 22
AC4
C
99 106Right-handed alpha
Helix 23
AC5
C
145 150Right-handed alpha
Helix 24
AC6
C
184 190Right-handed 310
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There are 11 sheets in PDB entry 5C9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
B
47 48anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 263anti-parallel
Strand 3
A
126 140anti-parallel
Strand 4
A
188 192anti-parallel
Strand 5
C
22 23parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
126 140anti-parallel
Strand 3
A
247 263anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
90 92anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 102first strand
Strand 2
B
259 264parallel
Strand 3
B
168 180anti-parallel
Strand 4
B
301 317anti-parallel
Strand 5
B
133 140anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
147 151anti-parallel
Strand 3
B
281 292anti-parallel
Strand 4
B
188 197anti-parallel
Strand 5
B
249 253anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
211 220anti-parallel
Strand 3
C
71 74anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
211 220anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
164 169anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 87first strand
Strand 2
C
193 198anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
153 158anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
108 112anti-parallel
Strand 3
C
225 229anti-parallel
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