Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C9C entry

There are 2 chains in PDB entry 5C9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 448SER 719
B
 ASP 448SER 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5C9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
490 505Right-handed alpha
Helix 2
AA2
A
536 542Right-handed alpha
Helix 3
AA3
A
548 569Right-handed alpha
Helix 4
AA4
A
577 579Right-handed 310
Helix 5
AA5
A
615 619Right-handed 310
Helix 6
AA6
A
620 626Right-handed alpha
Helix 7
AA7
A
633 651Right-handed alpha
Helix 8
AA8
A
660 670Right-handed alpha
Helix 9
AA9
A
676 680Right-handed 310
Helix 10
AB1
A
685 696Right-handed alpha
Helix 11
AB2
A
699 703Right-handed 310
Helix 12
AB3
A
705 718Right-handed alpha
Helix 13
AB4
B
490 505Right-handed alpha
Helix 14
AB5
B
536 542Right-handed alpha
Helix 15
AB6
B
548 569Right-handed alpha
Helix 16
AB7
B
577 579Right-handed 310
Helix 17
AB8
B
615 619Right-handed 310
Helix 18
AB9
B
620 625Right-handed alpha
Helix 19
AC1
B
633 651Right-handed alpha
Helix 20
AC2
B
660 670Right-handed alpha
Helix 21
AC3
B
676 680Right-handed 310
Helix 22
AC4
B
685 696Right-handed alpha
Helix 23
AC5
B
699 703Right-handed 310
Helix 24
AC6
B
705 718Right-handed alpha
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There are 4 sheets in PDB entry 5C9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 465first strand
Strand 2
A
468 474anti-parallel
Strand 3
A
478 483anti-parallel
Strand 4
A
525 529anti-parallel
Strand 5
A
515 519anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 535first strand
Strand 2
A
581 584anti-parallel
Strand 3
A
588 591anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 465first strand
Strand 2
B
468 474anti-parallel
Strand 3
B
478 483anti-parallel
Strand 4
B
525 529anti-parallel
Strand 5
B
515 519anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
533 535first strand
Strand 2
B
581 584anti-parallel
Strand 3
B
588 591anti-parallel
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