Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C9D entry

There are 2 chains in PDB entry 5C9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 109LEU 235
B
 GLU 110LEU 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5C9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 156Right-handed alpha
Helix 2
AA2
A
159 163Right-handed 310
Helix 3
AA3
A
210 215Right-handed alpha
Helix 4
AA4
B
150 156Right-handed alpha
Helix 5
AA5
B
210 215Right-handed alpha
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There are 4 sheets in PDB entry 5C9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
226 232anti-parallel
Strand 3
A
110 117anti-parallel
Strand 4
B
115 116anti-parallel
Strand 5
B
227 228anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 130first strand
Strand 2
A
133 139anti-parallel
Strand 3
A
207 209parallel
Strand 4
A
146 148anti-parallel
Strand 5
A
191 200parallel
Strand 6
A
178 187anti-parallel
Strand 7
A
125 130anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
191 200parallel
Strand 3
B
174 187anti-parallel
Strand 4
B
167 171anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
191 200parallel
Strand 3
B
174 187anti-parallel
Strand 4
B
125 130anti-parallel
Strand 5
B
133 139anti-parallel
Strand 6
B
207 209parallel
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