Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5C9F entry

There are 4 chains in PDB entry 5C9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 104	LEU 235
B	MET 104	LEU 235
C	MET 104	LEU 235
D	MET 104	GLU 236

There are 8 helices in PDB entry 5C9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	149	156	Right-handed alpha
Helix 2	AA2	A	210	215	Right-handed alpha
Helix 3	AA3	B	149	156	Right-handed alpha
Helix 4	AA4	B	210	215	Right-handed alpha
Helix 5	AA5	C	149	156	Right-handed alpha
Helix 6	AA6	C	210	215	Right-handed alpha
Helix 7	AA7	D	149	156	Right-handed alpha
Helix 8	AA8	D	210	215	Right-handed alpha

There are 6 sheets in PDB entry 5C9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	223	first strand
Strand 2	A	226	234	anti-parallel
Strand 3	A	105	117	anti-parallel
Strand 4	B	105	117	anti-parallel
Strand 5	B	226	234	anti-parallel
Strand 6	B	219	222	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	174	187	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	146	148	parallel
Strand 5	A	207	209	anti-parallel
Strand 6	A	133	139	parallel
Strand 7	A	125	130	anti-parallel
Strand 8	A	174	187	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	130	first strand
Strand 2	B	133	139	anti-parallel
Strand 3	B	207	209	parallel
Strand 4	B	146	148	anti-parallel
Strand 5	B	191	200	parallel
Strand 6	B	178	187	anti-parallel
Strand 7	B	125	130	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	223	first strand
Strand 2	C	226	234	anti-parallel
Strand 3	C	105	117	anti-parallel
Strand 4	D	105	117	anti-parallel
Strand 5	D	226	234	anti-parallel
Strand 6	D	219	223	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	177	187	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	146	148	parallel
Strand 5	C	207	209	anti-parallel
Strand 6	C	133	139	parallel
Strand 7	C	125	130	anti-parallel
Strand 8	C	177	187	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	130	first strand
Strand 2	D	133	139	anti-parallel
Strand 3	D	207	209	parallel
Strand 4	D	146	148	anti-parallel
Strand 5	D	191	200	parallel
Strand 6	D	178	187	anti-parallel
Strand 7	D	125	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5C9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9F