Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C9G entry

There are 6 chains in PDB entry 5C9G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -12ARG 260
B
 SER 0ARG 260
C
 THR 2ARG 260
D
 GLY -12ARG 260
E
 THR 2ARG 260
F
 GLN -1SER 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 5C9G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-7 2Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
28 45Right-handed alpha
Helix 4
AA4
A
66 68Right-handed 310
Helix 5
AA5
A
69 74Right-handed alpha
Helix 6
AA6
A
76 97Right-handed alpha
Helix 7
AA7
A
111 120Right-handed alpha
Helix 8
AA8
A
134 138Right-handed 310
Helix 9
AA9
A
143 155Right-handed alpha
Helix 10
AB1
A
155 166Right-handed alpha
Helix 11
AB2
A
171 177Right-handed alpha
Helix 12
AB3
A
188 202Right-handed alpha
Helix 13
AB4
A
204 220Right-handed alpha
Helix 14
AB5
A
226 236Right-handed alpha
Helix 15
AB6
A
239 252Right-handed alpha
Helix 16
AB7
B
20 24Right-handed 310
Helix 17
AB8
B
28 45Right-handed alpha
Helix 18
AB9
B
66 74Right-handed alpha
Helix 19
AC1
B
76 97Right-handed alpha
Helix 20
AC2
B
111 120Right-handed alpha
Helix 21
AC3
B
134 138Right-handed 310
Helix 22
AC4
B
143 166Right-handed alpha
Helix 23
AC5
B
171 177Right-handed alpha
Helix 24
AC6
B
188 202Right-handed alpha
Helix 25
AC7
B
204 220Right-handed alpha
Helix 26
AC8
B
226 236Right-handed alpha
Helix 27
AC9
B
239 252Right-handed alpha
Helix 28
AD1
C
20 24Right-handed 310
Helix 29
AD2
C
28 45Right-handed alpha
Helix 30
AD3
C
66 68Right-handed 310
Helix 31
AD4
C
69 74Right-handed alpha
Helix 32
AD5
C
76 96Right-handed alpha
Helix 33
AD6
C
111 120Right-handed alpha
Helix 34
AD7
C
134 138Right-handed 310
Helix 35
AD8
C
143 155Right-handed alpha
Helix 36
AD9
C
155 166Right-handed alpha
Helix 37
AE1
C
171 177Right-handed alpha
Helix 38
AE2
C
188 202Right-handed alpha
Helix 39
AE3
C
204 220Right-handed alpha
Helix 40
AE4
C
226 236Right-handed alpha
Helix 41
AE5
C
239 252Right-handed alpha
Helix 42
AE6
D
-7 2Right-handed alpha
Helix 43
AE7
D
20 24Right-handed 310
Helix 44
AE8
D
28 45Right-handed alpha
Helix 45
AE9
D
66 68Right-handed 310
Helix 46
AF1
D
69 74Right-handed alpha
Helix 47
AF2
D
76 97Right-handed alpha
Helix 48
AF3
D
111 120Right-handed alpha
Helix 49
AF4
D
134 138Right-handed 310
Helix 50
AF5
D
143 155Right-handed alpha
Helix 51
AF6
D
155 166Right-handed alpha
Helix 52
AF7
D
171 177Right-handed alpha
Helix 53
AF8
D
188 202Right-handed alpha
Helix 54
AF9
D
204 220Right-handed alpha
Helix 55
AG1
D
226 236Right-handed alpha
Helix 56
AG2
D
239 252Right-handed alpha
Helix 57
AG3
E
20 24Right-handed 310
Helix 58
AG4
E
28 45Right-handed alpha
Helix 59
AG5
E
66 74Right-handed alpha
Helix 60
AG6
E
76 97Right-handed alpha
Helix 61
AG7
E
111 120Right-handed alpha
Helix 62
AG8
E
134 138Right-handed 310
Helix 63
AG9
E
143 155Right-handed alpha
Helix 64
AH1
E
155 166Right-handed alpha
Helix 65
AH2
E
171 177Right-handed alpha
Helix 66
AH3
E
188 202Right-handed alpha
Helix 67
AH4
E
204 220Right-handed alpha
Helix 68
AH5
E
226 236Right-handed alpha
Helix 69
AH6
E
239 252Right-handed alpha
Helix 70
AH7
F
20 24Right-handed 310
Helix 71
AH8
F
28 45Right-handed alpha
Helix 72
AH9
F
66 74Right-handed alpha
Helix 73
AI1
F
76 96Right-handed alpha
Helix 74
AI2
F
111 120Right-handed alpha
Helix 75
AI3
F
134 138Right-handed 310
Helix 76
AI4
F
143 155Right-handed alpha
Helix 77
AI5
F
155 166Right-handed alpha
Helix 78
AI6
F
171 177Right-handed alpha
Helix 79
AI7
F
188 203Right-handed alpha
Helix 80
AI8
F
204 220Right-handed alpha
Helix 81
AI9
F
226 236Right-handed alpha
Helix 82
AJ1
F
239 252Right-handed alpha
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There are 12 sheets in PDB entry 5C9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
50 54parallel
Strand 4
A
101 105parallel
Strand 5
A
122 126parallel
Strand 6
A
182 184parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
108 110parallel
Strand 3
A
130 132parallel
Strand 4
A
169 170anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
13 18anti-parallel
Strand 3
B
50 54parallel
Strand 4
B
101 105parallel
Strand 5
B
122 126parallel
Strand 6
B
182 184parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
108 110parallel
Strand 3
B
130 132parallel
Strand 4
B
169 170anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 10first strand
Strand 2
C
13 18anti-parallel
Strand 3
C
50 54parallel
Strand 4
C
101 105parallel
Strand 5
C
122 126parallel
Strand 6
C
182 184parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
108 110parallel
Strand 3
C
130 132parallel
Strand 4
C
169 170anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 10first strand
Strand 2
D
13 18anti-parallel
Strand 3
D
50 54parallel
Strand 4
D
101 105parallel
Strand 5
D
122 126parallel
Strand 6
D
182 184parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 63first strand
Strand 2
D
108 110parallel
Strand 3
D
130 132parallel
Strand 4
D
169 170anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 10first strand
Strand 2
E
13 18anti-parallel
Strand 3
E
50 54parallel
Strand 4
E
101 105parallel
Strand 5
E
122 126parallel
Strand 6
E
182 184parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 63first strand
Strand 2
E
108 110parallel
Strand 3
E
130 132parallel
Strand 4
E
169 170anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 10first strand
Strand 2
F
13 18anti-parallel
Strand 3
F
50 54parallel
Strand 4
F
101 105parallel
Strand 5
F
122 126parallel
Strand 6
F
182 184parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
108 110first strand
Strand 2
F
130 132parallel
Strand 3
F
169 170anti-parallel
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