Analysis of interatomic Contacts of Structural Units in PDB entry:
5C9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5C9H entry

There are 6 chains in PDB entry 5C9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 218GLU 509
B
 GLN 218THR 503
D
 A 1 A 10
C
 U 1 U 12
E
 G -1 U 8
G
 C -3 U 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5C9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
301 320Right-handed alpha
Helix 2
AA2
A
322 330Right-handed alpha
Helix 3
AA3
A
336 346Right-handed alpha
Helix 4
AA4
A
355 368Right-handed alpha
Helix 5
AA5
A
372 388Right-handed alpha
Helix 6
AA6
A
394 404Right-handed alpha
Helix 7
AA7
A
404 411Right-handed alpha
Helix 8
AA8
A
419 424Right-handed alpha
Helix 9
AA9
A
425 426Right-handed 310
Helix 10
AB1
A
427 431Right-handed 310
Helix 11
AB2
A
444 467Right-handed alpha
Helix 12
AB3
A
467 475Right-handed alpha
Helix 13
AB4
A
493 505Right-handed alpha
Helix 14
AB5
A
506 508Right-handed 310
Helix 15
AB6
B
226 230Right-handed 310
Helix 16
AB7
B
301 320Right-handed alpha
Helix 17
AB8
B
322 330Right-handed alpha
Helix 18
AB9
B
336 344Right-handed alpha
Helix 19
AC1
B
362 369Right-handed 310
Helix 20
AC2
B
372 388Right-handed alpha
Helix 21
AC3
B
394 411Right-handed alpha
Helix 22
AC4
B
419 424Right-handed alpha
Helix 23
AC5
B
425 426Right-handed 310
Helix 24
AC6
B
427 431Right-handed 310
Helix 25
AC7
B
440 440Right-handed alpha
Helix 26
AC8
B
446 467Right-handed alpha
Helix 27
AC9
B
467 475Right-handed alpha
Helix 28
AD1
B
493 503Right-handed alpha
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There are 2 sheets in PDB entry 5C9H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 480first strand
Strand 2
A
488 492anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 480first strand
Strand 2
B
488 492anti-parallel
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