Analysis of interatomic Contacts of Structural Units in PDB entry:
5CA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CA9 entry

There is 1 chain in PDB entry 5CA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26VAL 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5CA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 50Right-handed alpha
Helix 2
AA2
A
70 79Right-handed alpha
Helix 3
AA3
A
136 150Right-handed alpha
Helix 4
AA4
A
160 162Right-handed 310
Helix 5
AA5
A
169 185Right-handed alpha
Helix 6
AA6
A
211 229Right-handed alpha
Helix 7
AA7
A
240 244Right-handed alpha
Helix 8
AA8
A
258 275Right-handed alpha
Helix 9
AA9
A
281 285Right-handed 310
Helix 10
AB1
A
289 306Right-handed alpha
Helix 11
AB2
A
314 337Right-handed alpha
Helix 12
AB3
A
351 375Right-handed alpha
Helix 13
AB4
A
378 422Right-handed alpha
Helix 14
AB5
A
427 449Right-handed alpha
Helix 15
AB6
A
458 497Right-handed alpha
Helix 16
AB7
A
497 505Right-handed alpha
Helix 17
AB8
A
511 520Right-handed alpha
Helix 18
AB9
A
542 562Right-handed alpha
Helix 19
AC1
A
563 580Right-handed alpha
Helix 20
AC2
A
592 597Right-handed alpha
Helix 21
AC3
A
600 607Right-handed alpha
Helix 22
AC4
A
610 615Right-handed alpha
Helix 23
AC5
A
670 675Right-handed alpha
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There are 2 sheets in PDB entry 5CA9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
58 64parallel
Strand 5
A
152 158parallel
Strand 6
A
197 204parallel
Strand 7
A
245 252parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
111 113anti-parallel
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