Analysis of interatomic Contacts of Structural Units in PDB entry:
5CAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CAD entry

There is 1 chain in PDB entry 5CAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5ALA 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5CAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
15 19Right-handed 310
Helix 3
AA3
A
40 47Right-handed 310
Helix 4
AA4
A
148 153Right-handed 310
Helix 5
AA5
A
154 163Right-handed alpha
Helix 6
AA6
A
165 173Right-handed alpha
Helix 7
AA7
A
185 194Right-handed alpha
Helix 8
AA8
A
236 240Right-handed 310
Helix 9
AA9
A
283 287Right-handed alpha
Helix 10
AB1
A
354 359Right-handed 310
Helix 11
AB2
A
360 369Right-handed alpha
Helix 12
AB3
A
371 381Right-handed alpha
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There are 6 sheets in PDB entry 5CAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
313 316anti-parallel
Strand 3
A
266 273anti-parallel
Strand 4
A
332 339anti-parallel
Strand 5
A
244 251anti-parallel
Strand 6
A
226 231anti-parallel
Strand 7
A
221 223anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
120 128anti-parallel
Strand 5
A
69 77anti-parallel
Strand 6
A
100 103anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
60 67anti-parallel
Strand 5
A
137 139anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 96first strand
Strand 2
A
79 85anti-parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
60 67anti-parallel
Strand 5
A
181 183anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 308first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
255 262anti-parallel
Strand 5
A
346 348anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 308first strand
Strand 2
A
275 282anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
255 262anti-parallel
Strand 5
A
387 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il