Analysis of interatomic Contacts of Structural Units in PDB entry:
5CAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CAE entry

There are 3 chains in PDB entry 5CAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 304
B
 MET 1SER 124
B
 ASN 126THR 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5CAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed 310
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
63 72Right-handed alpha
Helix 4
AA4
A
81 95Right-handed alpha
Helix 5
AA5
A
108 120Right-handed alpha
Helix 6
AA6
A
147 151Right-handed 310
Helix 7
AA7
A
162 176Right-handed alpha
Helix 8
AA8
A
195 206Right-handed alpha
Helix 9
AA9
A
221 234Right-handed alpha
Helix 10
AB1
A
270 281Right-handed alpha
Helix 11
AB2
A
288 290Right-handed 310
Helix 12
AB3
A
291 303Right-handed alpha
Helix 13
AB4
B
4 15Right-handed alpha
Helix 14
AB5
B
27 39Right-handed alpha
Helix 15
AB6
B
53 57Right-handed 310
Helix 16
AB7
B
72 82Right-handed alpha
Helix 17
AB8
B
139 147Right-handed alpha
Helix 18
AB9
B
148 151Right-handed 310
Helix 19
AC1
B
163 174Right-handed alpha
Helix 20
AC2
B
177 198Right-handed alpha
Helix 21
AC3
B
227 232Right-handed 310
Helix 22
AC4
B
233 238Right-handed alpha
Helix 23
AC5
B
246 255Right-handed alpha
Helix 24
AC6
B
272 286Right-handed alpha
Helix 25
AC7
B
301 315Right-handed alpha
Helix 26
AC8
B
331 345Right-handed alpha
Helix 27
AC9
B
360 370Right-handed alpha
Helix 28
AD1
B
380 391Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5CAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
58 61anti-parallel
Strand 3
A
41 46parallel
Strand 4
A
17 21parallel
Strand 5
A
75 78parallel
Strand 6
A
99 102parallel
Strand 7
A
126 128parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
180 185anti-parallel
Strand 4
A
153 160parallel
Strand 5
A
211 217parallel
Strand 6
A
242 247parallel
Strand 7
A
284 285parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
103 107anti-parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
87 89anti-parallel
Strand 3
B
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
113 122anti-parallel
Strand 4
B
200 210anti-parallel
Strand 5
B
216 218anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 155first strand
Strand 2
B
127 133anti-parallel
Strand 3
B
113 122anti-parallel
Strand 4
B
200 210anti-parallel
Strand 5
B
221 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 261first strand
Strand 2
B
292 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 270first strand
Strand 2
B
320 327parallel
Strand 3
B
352 358parallel
Strand 4
B
375 377parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il