Analysis of interatomic Contacts of Structural Units in PDB entry:
5CAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CAG entry

There is 1 chain in PDB entry 5CAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PRO 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 5CAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 106Right-handed 310
Helix 2
AA2
A
121 125Right-handed 310
Helix 3
AA3
A
170 172Right-handed 310
Helix 4
AA4
A
269 274Right-handed alpha
Helix 5
AA5
A
293 297Right-handed 310
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There are 5 sheets in PDB entry 5CAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
149 154parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
51 58anti-parallel
Strand 3
A
82 90anti-parallel
Strand 4
A
133 142anti-parallel
Strand 5
A
156 157anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
108 111anti-parallel
Strand 3
A
187 189anti-parallel
Strand 4
A
194 196anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
247 254anti-parallel
Strand 3
A
174 182anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
212 220anti-parallel
Strand 6
A
159 169anti-parallel
Strand 7
A
289 290parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 265first strand
Strand 2
A
247 254anti-parallel
Strand 3
A
174 182anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
212 220anti-parallel
Strand 6
A
159 169anti-parallel
Strand 7
A
298 299parallel
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