Analysis of interatomic Contacts of Structural Units in PDB entry:
5CB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CB0 entry

There are 2 chains in PDB entry 5CB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3PRO 307
B
 MET 3PRO 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5CB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
53 83Right-handed alpha
Helix 4
AA4
A
95 108Right-handed alpha
Helix 5
AA5
A
128 138Right-handed alpha
Helix 6
AA6
A
168 185Right-handed alpha
Helix 7
AA7
A
214 237Right-handed alpha
Helix 8
AA8
A
249 261Right-handed alpha
Helix 9
AA9
A
282 291Right-handed alpha
Helix 10
AB1
B
18 29Right-handed alpha
Helix 11
AB2
B
43 48Right-handed 310
Helix 12
AB3
B
53 82Right-handed alpha
Helix 13
AB4
B
95 108Right-handed alpha
Helix 14
AB5
B
128 138Right-handed alpha
Helix 15
AB6
B
166 188Right-handed alpha
Helix 16
AB7
B
213 234Right-handed alpha
Helix 17
AB8
B
239 241Right-handed 310
Helix 18
AB9
B
249 261Right-handed alpha
Helix 19
AC1
B
282 291Right-handed alpha
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There are 2 sheets in PDB entry 5CB0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 92first strand
Strand 2
A
34 41parallel
Strand 3
A
6 10parallel
Strand 4
A
111 116parallel
Strand 5
A
142 146parallel
Strand 6
A
295 298anti-parallel
Strand 7
A
265 268parallel
Strand 8
A
156 160parallel
Strand 9
A
192 198parallel
Strand 10
A
243 247parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 92first strand
Strand 2
B
34 41parallel
Strand 3
B
6 10parallel
Strand 4
B
111 116parallel
Strand 5
B
142 146parallel
Strand 6
B
295 299anti-parallel
Strand 7
B
265 269parallel
Strand 8
B
155 159parallel
Strand 9
B
191 198parallel
Strand 10
B
243 247parallel
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