Analysis of interatomic Contacts of Structural Units in PDB entry:
5CB2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CB2 entry

There is 1 chain in PDB entry 5CB2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26VAL 687
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5CB2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 50Right-handed alpha
Helix 2
AA2
A
70 79Right-handed alpha
Helix 3
AA3
A
136 150Right-handed alpha
Helix 4
AA4
A
160 162Right-handed 310
Helix 5
AA5
A
169 184Right-handed alpha
Helix 6
AA6
A
211 230Right-handed alpha
Helix 7
AA7
A
233 237Right-handed 310
Helix 8
AA8
A
240 244Right-handed alpha
Helix 9
AA9
A
258 274Right-handed alpha
Helix 10
AB1
A
289 306Right-handed alpha
Helix 11
AB2
A
315 337Right-handed alpha
Helix 12
AB3
A
351 375Right-handed alpha
Helix 13
AB4
A
378 424Right-handed alpha
Helix 14
AB5
A
427 447Right-handed alpha
Helix 15
AB6
A
458 487Right-handed alpha
Helix 16
AB7
A
492 505Right-handed alpha
Helix 17
AB8
A
511 514Right-handed 310
Helix 18
AB9
A
515 520Right-handed alpha
Helix 19
AC1
A
535 542Right-handed alpha
Helix 20
AC2
A
542 562Right-handed alpha
Helix 21
AC3
A
563 576Right-handed alpha
Helix 22
AC4
A
592 597Right-handed alpha
Helix 23
AC5
A
600 607Right-handed alpha
Helix 24
AC6
A
610 615Right-handed alpha
Helix 25
AC7
A
633 638Right-handed alpha
Helix 26
AC8
A
660 665Right-handed alpha
Helix 27
AC9
A
671 680Right-handed alpha
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There are 2 sheets in PDB entry 5CB2. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
58 64parallel
Strand 5
A
152 158parallel
Strand 6
A
197 204parallel
Strand 7
A
245 251parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
111 113anti-parallel
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