Analysis of interatomic Contacts of Structural Units in PDB entry:
5CBQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CBQ entry

There are 6 chains in PDB entry 5CBQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 4	VAL 404
B	ARG 4	GLN 405
C	ARG 4	GLN 405
D	ARG 4	GLU 406
E	ARG 4	GLN 405
F	ARG 4	VAL 404

There are120 helices in PDB entry 5CBQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	66	75	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	91	106	Right-handed alpha
Helix 6	AA6	A	121	123	Right-handed 310
Helix 7	AA7	A	144	152	Right-handed alpha
Helix 8	AA8	A	162	175	Right-handed alpha
Helix 9	AA9	A	177	198	Right-handed alpha
Helix 10	AB1	A	200	205	Right-handed alpha
Helix 11	AB2	A	230	235	Right-handed alpha
Helix 12	AB3	A	269	277	Right-handed alpha
Helix 13	AB4	A	293	299	Right-handed 310
Helix 14	AB5	A	300	313	Right-handed alpha
Helix 15	AB6	A	315	319	Right-handed 310
Helix 16	AB7	A	328	339	Right-handed alpha
Helix 17	AB8	A	342	349	Right-handed 310
Helix 18	AB9	A	354	359	Right-handed alpha
Helix 19	AC1	A	361	363	Right-handed 310
Helix 20	AC2	A	364	381	Right-handed alpha
Helix 21	AC3	B	27	44	Right-handed alpha
Helix 22	AC4	B	46	50	Right-handed 310
Helix 23	AC5	B	66	75	Right-handed alpha
Helix 24	AC6	B	88	90	Right-handed 310
Helix 25	AC7	B	91	106	Right-handed alpha
Helix 26	AC8	B	121	123	Right-handed 310
Helix 27	AC9	B	144	152	Right-handed alpha
Helix 28	AD1	B	162	175	Right-handed alpha
Helix 29	AD2	B	177	198	Right-handed alpha
Helix 30	AD3	B	200	205	Right-handed alpha
Helix 31	AD4	B	230	236	Right-handed alpha
Helix 32	AD5	B	269	276	Right-handed alpha
Helix 33	AD6	B	293	299	Right-handed 310
Helix 34	AD7	B	300	312	Right-handed alpha
Helix 35	AD8	B	315	319	Right-handed 310
Helix 36	AD9	B	328	339	Right-handed alpha
Helix 37	AE1	B	344	349	Right-handed 310
Helix 38	AE2	B	354	359	Right-handed alpha
Helix 39	AE3	B	361	363	Right-handed 310
Helix 40	AE4	B	364	381	Right-handed alpha
Helix 41	AE5	C	27	44	Right-handed alpha
Helix 42	AE6	C	46	50	Right-handed 310
Helix 43	AE7	C	66	75	Right-handed alpha
Helix 44	AE8	C	88	90	Right-handed 310
Helix 45	AE9	C	91	106	Right-handed alpha
Helix 46	AF1	C	121	123	Right-handed 310
Helix 47	AF2	C	144	152	Right-handed alpha
Helix 48	AF3	C	161	175	Right-handed alpha
Helix 49	AF4	C	177	198	Right-handed alpha
Helix 50	AF5	C	200	205	Right-handed alpha
Helix 51	AF6	C	230	236	Right-handed alpha
Helix 52	AF7	C	269	277	Right-handed alpha
Helix 53	AF8	C	293	299	Right-handed 310
Helix 54	AF9	C	300	312	Right-handed alpha
Helix 55	AG1	C	315	319	Right-handed 310
Helix 56	AG2	C	328	339	Right-handed alpha
Helix 57	AG3	C	344	348	Right-handed 310
Helix 58	AG4	C	354	359	Right-handed alpha
Helix 59	AG5	C	361	363	Right-handed 310
Helix 60	AG6	C	364	381	Right-handed alpha
Helix 61	AG7	D	27	44	Right-handed alpha
Helix 62	AG8	D	46	50	Right-handed 310
Helix 63	AG9	D	66	75	Right-handed alpha
Helix 64	AH1	D	88	90	Right-handed 310
Helix 65	AH2	D	91	106	Right-handed alpha
Helix 66	AH3	D	121	123	Right-handed 310
Helix 67	AH4	D	144	152	Right-handed alpha
Helix 68	AH5	D	162	175	Right-handed alpha
Helix 69	AH6	D	177	198	Right-handed alpha
Helix 70	AH7	D	200	205	Right-handed alpha
Helix 71	AH8	D	230	235	Right-handed alpha
Helix 72	AH9	D	269	277	Right-handed alpha
Helix 73	AI1	D	293	299	Right-handed 310
Helix 74	AI2	D	300	312	Right-handed alpha
Helix 75	AI3	D	315	319	Right-handed 310
Helix 76	AI4	D	328	339	Right-handed alpha
Helix 77	AI5	D	344	349	Right-handed 310
Helix 78	AI6	D	354	359	Right-handed alpha
Helix 79	AI7	D	361	363	Right-handed 310
Helix 80	AI8	D	364	381	Right-handed alpha
Helix 81	AI9	E	27	44	Right-handed alpha
Helix 82	AJ1	E	46	50	Right-handed 310
Helix 83	AJ2	E	66	75	Right-handed alpha
Helix 84	AJ3	E	88	90	Right-handed 310
Helix 85	AJ4	E	91	106	Right-handed alpha
Helix 86	AJ5	E	121	123	Right-handed 310
Helix 87	AJ6	E	144	152	Right-handed alpha
Helix 88	AJ7	E	161	175	Right-handed alpha
Helix 89	AJ8	E	177	198	Right-handed alpha
Helix 90	AJ9	E	200	205	Right-handed alpha
Helix 91	AK1	E	230	235	Right-handed alpha
Helix 92	AK2	E	269	277	Right-handed alpha
Helix 93	AK3	E	293	299	Right-handed 310
Helix 94	AK4	E	300	312	Right-handed alpha
Helix 95	AK5	E	315	319	Right-handed 310
Helix 96	AK6	E	328	339	Right-handed alpha
Helix 97	AK7	E	345	349	Right-handed 310
Helix 98	AK8	E	354	359	Right-handed alpha
Helix 99	AK9	E	361	363	Right-handed 310
Helix 100	AL1	E	364	381	Right-handed alpha
Helix 101	AL2	F	27	44	Right-handed alpha
Helix 102	AL3	F	46	50	Right-handed 310
Helix 103	AL4	F	66	75	Right-handed alpha
Helix 104	AL5	F	88	90	Right-handed 310
Helix 105	AL6	F	91	106	Right-handed alpha
Helix 106	AL7	F	144	152	Right-handed alpha
Helix 107	AL8	F	161	175	Right-handed alpha
Helix 108	AL9	F	177	198	Right-handed alpha
Helix 109	AM1	F	200	205	Right-handed alpha
Helix 110	AM2	F	230	235	Right-handed alpha
Helix 111	AM3	F	241	245	Right-handed 310
Helix 112	AM4	F	269	276	Right-handed alpha
Helix 113	AM5	F	293	299	Right-handed 310
Helix 114	AM6	F	300	313	Right-handed alpha
Helix 115	AM7	F	315	319	Right-handed 310
Helix 116	AM8	F	328	339	Right-handed alpha
Helix 117	AM9	F	344	348	Right-handed 310
Helix 118	AN1	F	354	359	Right-handed alpha
Helix 119	AN2	F	361	363	Right-handed 310
Helix 120	AN3	F	364	381	Right-handed alpha

There are 15 sheets in PDB entry 5CBQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	259	268	anti-parallel
Strand 3	A	111	119	anti-parallel
Strand 4	A	53	56	parallel
Strand 5	A	83	87	parallel
Strand 6	B	83	87	anti-parallel
Strand 7	B	53	56	parallel
Strand 8	B	111	119	parallel
Strand 9	B	259	268	anti-parallel
Strand 10	B	17	18	anti-parallel

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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	384	391	parallel
Strand 3	A	395	403	anti-parallel
Strand 4	A	280	291	anti-parallel
Strand 5	A	7	13	anti-parallel
Strand 6	A	259	268	anti-parallel
Strand 7	A	111	119	anti-parallel
Strand 8	A	53	56	parallel
Strand 9	A	83	87	parallel
Strand 10	B	83	87	anti-parallel
Strand 11	B	53	56	parallel
Strand 12	B	111	119	parallel
Strand 13	B	259	268	anti-parallel
Strand 14	B	7	13	anti-parallel
Strand 15	B	280	291	anti-parallel
Strand 16	B	395	403	anti-parallel
Strand 17	B	384	391	anti-parallel
Strand 18	B	321	324	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	125	127	anti-parallel
Strand 3	B	125	127	anti-parallel
Strand 4	B	142	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	216	219	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	217	219	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	C	259	268	anti-parallel
Strand 3	C	111	119	anti-parallel
Strand 4	C	53	56	parallel
Strand 5	C	83	87	parallel
Strand 6	D	83	87	anti-parallel
Strand 7	D	53	56	parallel
Strand 8	D	111	119	parallel
Strand 9	D	259	268	anti-parallel
Strand 10	D	17	18	anti-parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	324	first strand
Strand 2	C	384	391	parallel
Strand 3	C	395	403	anti-parallel
Strand 4	C	282	291	anti-parallel
Strand 5	C	7	13	anti-parallel
Strand 6	C	259	268	anti-parallel
Strand 7	C	111	119	anti-parallel
Strand 8	C	53	56	parallel
Strand 9	C	83	87	parallel
Strand 10	D	83	87	anti-parallel
Strand 11	D	53	56	parallel
Strand 12	D	111	119	parallel
Strand 13	D	259	268	anti-parallel
Strand 14	D	7	13	anti-parallel
Strand 15	D	280	291	anti-parallel
Strand 16	D	395	403	anti-parallel
Strand 17	D	384	391	anti-parallel
Strand 18	D	321	324	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	143	first strand
Strand 2	C	125	127	anti-parallel
Strand 3	D	125	127	anti-parallel
Strand 4	D	142	143	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	217	219	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	209	first strand
Strand 2	D	218	219	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	259	268	anti-parallel
Strand 3	E	111	119	anti-parallel
Strand 4	E	53	56	parallel
Strand 5	E	83	87	parallel
Strand 6	F	83	87	anti-parallel
Strand 7	F	53	56	parallel
Strand 8	F	111	119	parallel
Strand 9	F	259	268	anti-parallel
Strand 10	F	17	18	anti-parallel

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There are 18 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	324	first strand
Strand 2	E	384	391	parallel
Strand 3	E	395	403	anti-parallel
Strand 4	E	280	291	anti-parallel
Strand 5	E	7	13	anti-parallel
Strand 6	E	259	268	anti-parallel
Strand 7	E	111	119	anti-parallel
Strand 8	E	53	56	parallel
Strand 9	E	83	87	parallel
Strand 10	F	83	87	anti-parallel
Strand 11	F	53	56	parallel
Strand 12	F	111	119	parallel
Strand 13	F	259	268	anti-parallel
Strand 14	F	7	13	anti-parallel
Strand 15	F	280	291	anti-parallel
Strand 16	F	395	403	anti-parallel
Strand 17	F	384	391	anti-parallel
Strand 18	F	321	324	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	143	first strand
Strand 2	E	125	127	anti-parallel
Strand 3	F	125	127	anti-parallel
Strand 4	F	142	143	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	211	first strand
Strand 2	E	216	219	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	209	first strand
Strand 2	F	218	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CBQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CBQ