Analysis of interatomic Contacts of Structural Units in PDB entry:
5CBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CBS entry

There are 4 chains in PDB entry 5CBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 1SER 260
B
THR 2SER 260
C
ALA -1GLY 259
D
GLY -2GLY 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 5CBS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
19 23Right-handed 310
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
31 45Right-handed alpha
Helix 4
AA4
A
69 77Right-handed alpha
Helix 5
AA5
A
90 95Right-handed alpha
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
138 146Right-handed alpha
Helix 8
AA8
A
149 162Right-handed alpha
Helix 9
AA9
A
170 181Right-handed alpha
Helix 10
AB1
A
191 199Right-handed alpha
Helix 11
AB2
A
227 241Right-handed alpha
Helix 12
AB3
A
242 253Right-handed alpha
Helix 13
AB4
B
19 23Right-handed 310
Helix 14
AB5
B
24 27Right-handed 310
Helix 15
AB6
B
31 45Right-handed alpha
Helix 16
AB7
B
69 77Right-handed alpha
Helix 17
AB8
B
90 95Right-handed alpha
Helix 18
AB9
B
120 126Right-handed alpha
Helix 19
AC1
B
138 147Right-handed alpha
Helix 20
AC2
B
149 162Right-handed alpha
Helix 21
AC3
B
170 181Right-handed alpha
Helix 22
AC4
B
191 199Right-handed alpha
Helix 23
AC5
B
227 241Right-handed alpha
Helix 24
AC6
B
242 253Right-handed alpha
Helix 25
AC7
C
19 23Right-handed 310
Helix 26
AC8
C
24 27Right-handed 310
Helix 27
AC9
C
31 45Right-handed alpha
Helix 28
AD1
C
69 77Right-handed alpha
Helix 29
AD2
C
90 95Right-handed alpha
Helix 30
AD3
C
120 126Right-handed alpha
Helix 31
AD4
C
138 146Right-handed alpha
Helix 32
AD5
C
149 162Right-handed alpha
Helix 33
AD6
C
170 181Right-handed alpha
Helix 34
AD7
C
191 199Right-handed alpha
Helix 35
AD8
C
227 241Right-handed alpha
Helix 36
AD9
C
242 253Right-handed alpha
Helix 37
AE1
D
19 23Right-handed 310
Helix 38
AE2
D
24 27Right-handed 310
Helix 39
AE3
D
31 45Right-handed alpha
Helix 40
AE4
D
69 77Right-handed alpha
Helix 41
AE5
D
90 96Right-handed alpha
Helix 42
AE6
D
120 126Right-handed alpha
Helix 43
AE7
D
138 147Right-handed alpha
Helix 44
AE8
D
149 162Right-handed alpha
Helix 45
AE9
D
170 181Right-handed alpha
Helix 46
AF1
D
191 198Right-handed alpha
Helix 47
AF2
D
227 241Right-handed alpha
Helix 48
AF3
D
242 253Right-handed alpha
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There are 20 sheets in PDB entry 5CBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 52first strand
Strand 2
A
3 7parallel
Strand 3
A
82 83parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 16first strand
Strand 2
A
29 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
97 99first strand
Strand 2
A
220 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
104 106first strand
Strand 2
A
215 217anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
131 133first strand
Strand 2
A
185 190parallel
Strand 3
A
108 113anti-parallel
Strand 4
A
205 208anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 52first strand
Strand 2
B
3 7parallel
Strand 3
B
82 83parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
15 16first strand
Strand 2
B
29 30anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 99first strand
Strand 2
B
220 222anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
104 106first strand
Strand 2
B
215 217anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
131 133first strand
Strand 2
B
185 190parallel
Strand 3
B
108 113anti-parallel
Strand 4
B
205 208anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 52first strand
Strand 2
C
3 7parallel
Strand 3
C
82 83parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
15 16first strand
Strand 2
C
29 30anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
97 99first strand
Strand 2
C
220 222anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
104 106first strand
Strand 2
C
215 217anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 133first strand
Strand 2
C
185 190parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
205 208anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 52first strand
Strand 2
D
3 7parallel
Strand 3
D
82 83parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
15 16first strand
Strand 2
D
29 30anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
97 99first strand
Strand 2
D
220 222anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
104 106first strand
Strand 2
D
215 217anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
131 133first strand
Strand 2
D
185 190parallel
Strand 3
D
108 113anti-parallel
Strand 4
D
205 208anti-parallel
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