Analysis of interatomic Contacts of Structural Units in PDB entry:
5CC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CC8 entry

There are 2 chains in PDB entry 5CC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ILE 298
B
 GLU 3ILE 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5CC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 11Right-handed alpha
Helix 2
AA2
A
56 74Right-handed alpha
Helix 3
AA3
A
92 110Right-handed alpha
Helix 4
AA4
A
159 167Right-handed alpha
Helix 5
AA5
A
172 178Right-handed alpha
Helix 6
AA6
A
182 190Right-handed alpha
Helix 7
AA7
A
202 215Right-handed alpha
Helix 8
AA8
A
223 225Right-handed 310
Helix 9
AA9
A
228 233Right-handed alpha
Helix 10
AB1
A
235 246Right-handed alpha
Helix 11
AB2
A
257 266Right-handed alpha
Helix 12
AB3
B
4 11Right-handed alpha
Helix 13
AB4
B
56 74Right-handed alpha
Helix 14
AB5
B
92 110Right-handed alpha
Helix 15
AB6
B
159 167Right-handed alpha
Helix 16
AB7
B
172 178Right-handed alpha
Helix 17
AB8
B
182 190Right-handed alpha
Helix 18
AB9
B
202 215Right-handed alpha
Helix 19
AC1
B
223 225Right-handed 310
Helix 20
AC2
B
228 233Right-handed alpha
Helix 21
AC3
B
235 246Right-handed alpha
Helix 22
AC4
B
257 266Right-handed alpha
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There are 4 sheets in PDB entry 5CC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
B
36 46anti-parallel
Strand 3
B
126 136anti-parallel
Strand 4
B
78 88anti-parallel
Strand 5
B
113 121parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 121first strand
Strand 2
A
78 88parallel
Strand 3
A
126 136anti-parallel
Strand 4
A
36 46anti-parallel
Strand 5
B
28 30anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
252 256anti-parallel
Strand 3
A
151 155anti-parallel
Strand 4
A
273 280anti-parallel
Strand 5
A
217 221anti-parallel
Strand 6
A
285 289parallel
Strand 7
A
292 293anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 198first strand
Strand 2
B
252 256anti-parallel
Strand 3
B
151 155anti-parallel
Strand 4
B
273 280anti-parallel
Strand 5
B
217 221anti-parallel
Strand 6
B
285 289parallel
Strand 7
B
292 293anti-parallel
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