Analysis of interatomic Contacts of Structural Units in PDB entry:
5CCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CCI entry

There are 6 chains in PDB entry 5CCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28TRP 89
B
 MET 190LYS 256
C
 GLU 10GLY 82
D
 MET 140LEU 203
E
 LYS 141LYS 420
F
 LYS 141LYS 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5CCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 89Right-handed alpha
Helix 2
AA2
B
191 256Right-handed alpha
Helix 3
AA3
C
11 82Right-handed alpha
Helix 4
AA4
D
141 202Right-handed alpha
Helix 5
AA5
E
215 220Right-handed alpha
Helix 6
AA6
E
351 354Right-handed 310
Helix 7
AA7
E
384 396Right-handed alpha
Helix 8
AA8
E
409 418Right-handed alpha
Helix 9
AA9
F
215 220Right-handed alpha
Helix 10
AB1
F
351 354Right-handed 310
Helix 11
AB2
F
384 396Right-handed alpha
Helix 12
AB3
F
409 418Right-handed alpha
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There are 9 sheets in PDB entry 5CCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 212first strand
Strand 2
E
157 166anti-parallel
Strand 3
E
144 152anti-parallel
Strand 4
E
256 261anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
193 194first strand
Strand 2
E
179 185anti-parallel
Strand 3
E
223 230anti-parallel
Strand 4
E
239 246anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
338 346first strand
Strand 2
E
288 297anti-parallel
Strand 3
E
275 283anti-parallel
Strand 4
E
401 406anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
321 327first strand
Strand 2
E
310 318anti-parallel
Strand 3
E
356 363anti-parallel
Strand 4
E
372 379anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
205 212first strand
Strand 2
F
157 166anti-parallel
Strand 3
F
144 152anti-parallel
Strand 4
F
256 261anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
193 194first strand
Strand 2
F
179 185anti-parallel
Strand 3
F
223 230anti-parallel
Strand 4
F
239 241anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
193 194first strand
Strand 2
F
179 185anti-parallel
Strand 3
F
223 230anti-parallel
Strand 4
F
244 246anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
338 346first strand
Strand 2
F
288 297anti-parallel
Strand 3
F
275 283anti-parallel
Strand 4
F
401 406anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
321 327first strand
Strand 2
F
310 318anti-parallel
Strand 3
F
356 363anti-parallel
Strand 4
F
374 379anti-parallel
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