Analysis of interatomic Contacts of Structural Units in PDB entry:
5CCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CCU entry

There are 2 chains in PDB entry 5CCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37PRO 485
B
 ALA 38PRO 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5CCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
81 91Right-handed alpha
Helix 2
AA2
A
101 106Right-handed alpha
Helix 3
AA3
A
113 129Right-handed alpha
Helix 4
AA4
A
144 148Right-handed 310
Helix 5
AA5
A
153 157Right-handed 310
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
176 189Right-handed alpha
Helix 8
AA8
A
192 209Right-handed alpha
Helix 9
AA9
A
225 233Right-handed 310
Helix 10
AB1
A
237 259Right-handed alpha
Helix 11
AB2
A
269 275Right-handed 310
Helix 12
AB3
A
302 312Right-handed alpha
Helix 13
AB4
A
314 319Right-handed 310
Helix 14
AB5
A
320 340Right-handed alpha
Helix 15
AB6
A
355 367Right-handed alpha
Helix 16
AB7
A
386 393Right-handed alpha
Helix 17
AB8
B
70 74Right-handed 310
Helix 18
AB9
B
81 91Right-handed alpha
Helix 19
AC1
B
101 106Right-handed alpha
Helix 20
AC2
B
113 129Right-handed alpha
Helix 21
AC3
B
144 148Right-handed 310
Helix 22
AC4
B
153 157Right-handed 310
Helix 23
AC5
B
171 175Right-handed 310
Helix 24
AC6
B
176 188Right-handed alpha
Helix 25
AC7
B
192 208Right-handed alpha
Helix 26
AC8
B
225 233Right-handed 310
Helix 27
AC9
B
237 257Right-handed alpha
Helix 28
AD1
B
269 275Right-handed 310
Helix 29
AD2
B
302 307Right-handed alpha
Helix 30
AD3
B
321 340Right-handed alpha
Helix 31
AD4
B
353 367Right-handed alpha
Helix 32
AD5
B
386 393Right-handed alpha
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There are 9 sheets in PDB entry 5CCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
50 52anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
396 400anti-parallel
Strand 3
A
429 432anti-parallel
Strand 4
A
459 464anti-parallel
Strand 5
A
449 451anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
264 266parallel
Strand 3
A
214 218parallel
Strand 4
A
133 138parallel
Strand 5
A
95 100parallel
Strand 6
A
62 66parallel
Strand 7
A
369 372parallel
Strand 8
A
344 345parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
347 348parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 409first strand
Strand 2
A
416 422anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
443 447anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
50 52anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
396 400anti-parallel
Strand 3
B
429 432anti-parallel
Strand 4
B
459 464anti-parallel
Strand 5
B
449 451anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
264 266parallel
Strand 3
B
214 218parallel
Strand 4
B
133 138parallel
Strand 5
B
95 100parallel
Strand 6
B
62 66parallel
Strand 7
B
369 372parallel
Strand 8
B
344 348parallel
Strand 9
B
299 300parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 409first strand
Strand 2
B
416 422anti-parallel
Strand 3
B
470 475anti-parallel
Strand 4
B
443 447anti-parallel
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