Analysis of interatomic Contacts of Structural Units in PDB entry:
5CCX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CCX entry

There are 4 chains in PDB entry 5CCX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 289
B
 HIS 18ASN 463
N
 G 0 A 57
N
 G 59 A 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5CCX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed alpha
Helix 2
AA2
A
72 80Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
115 126Right-handed alpha
Helix 5
AA5
A
137 151Right-handed alpha
Helix 6
AA6
A
153 155Right-handed 310
Helix 7
AA7
A
163 168Right-handed alpha
Helix 8
AA8
A
184 187Right-handed 310
Helix 9
AA9
A
188 196Right-handed alpha
Helix 10
AB1
A
209 224Right-handed alpha
Helix 11
AB2
B
55 57Right-handed 310
Helix 12
AB3
B
109 117Right-handed alpha
Helix 13
AB4
B
121 131Right-handed alpha
Helix 14
AB5
B
134 138Right-handed 310
Helix 15
AB6
B
139 155Right-handed alpha
Helix 16
AB7
B
164 176Right-handed alpha
Helix 17
AB8
B
177 181Right-handed 310
Helix 18
AB9
B
184 195Right-handed alpha
Helix 19
AC1
B
211 222Right-handed alpha
Helix 20
AC2
B
238 244Right-handed alpha
Helix 21
AC3
B
247 251Right-handed 310
Helix 22
AC4
B
261 266Right-handed alpha
Helix 23
AC5
B
341 366Right-handed alpha
Helix 24
AC6
B
379 388Right-handed alpha
Helix 25
AC7
B
389 391Right-handed 310
Helix 26
AC8
B
404 418Right-handed alpha
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There are 6 sheets in PDB entry 5CCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
15 19anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
57 59anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
41 44anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
130 134parallel
Strand 3
A
106 110parallel
Strand 4
A
177 180parallel
Strand 5
A
201 207parallel
Strand 6
A
280 286anti-parallel
Strand 7
A
226 243anti-parallel
Strand 8
B
420 434anti-parallel
Strand 9
B
452 458anti-parallel
Strand 10
B
396 401anti-parallel
Strand 11
B
371 375parallel
Strand 12
B
202 207parallel
Strand 13
B
226 231parallel
Strand 14
B
254 258parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
226 243anti-parallel
Strand 3
B
420 434anti-parallel
Strand 4
B
441 446anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
25 29anti-parallel
Strand 3
B
158 161anti-parallel
Strand 4
B
64 68anti-parallel
Strand 5
B
73 74anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
51 53anti-parallel
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