Analysis of interatomic Contacts of Structural Units in PDB entry:
5CD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CD2 entry

There is 1 chain in PDB entry 5CD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 45ASN 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5CD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 56Right-handed alpha
Helix 2
AA2
A
74 87Right-handed alpha
Helix 3
AA3
A
89 105Right-handed alpha
Helix 4
AA4
A
134 152Right-handed alpha
Helix 5
AA5
A
154 172Right-handed alpha
Helix 6
AA6
A
200 204Right-handed 310
Helix 7
AA7
A
205 215Right-handed alpha
Helix 8
AA8
A
218 235Right-handed alpha
Helix 9
AA9
A
266 275Right-handed alpha
Helix 10
AB1
A
280 288Right-handed alpha
Helix 11
AB2
A
290 301Right-handed alpha
Helix 12
AB3
A
319 326Right-handed alpha
Helix 13
AB4
A
326 331Right-handed alpha
Helix 14
AB5
A
338 350Right-handed alpha
Helix 15
AB6
A
351 354Right-handed 310
Helix 16
AB7
A
357 372Right-handed alpha
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There are 6 sheets in PDB entry 5CD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
61 62anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
117 120anti-parallel
Strand 3
A
126 130anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
180 183anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
196 199anti-parallel
Strand 3
A
245 248anti-parallel
Strand 4
A
252 254anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
304 308anti-parallel
Strand 3
A
314 317anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
383 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il