Analysis of interatomic Contacts of Structural Units in PDB entry:
5CD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CD6 entry

There are 3 chains in PDB entry 5CD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 22	GLU 600
B	GLN 22	GLU 600
C	GLN 22	LEU 108

There are 59 helices in PDB entry 5CD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	92	Right-handed 310
Helix 2	AA2	A	236	240	Right-handed alpha
Helix 3	AA3	A	243	247	Right-handed 310
Helix 4	AA4	A	294	301	Right-handed 310
Helix 5	AA5	A	347	351	Right-handed 310
Helix 6	AA6	A	360	364	Right-handed 310
Helix 7	AA7	A	371	387	Right-handed alpha
Helix 8	AA8	A	410	421	Right-handed alpha
Helix 9	AA9	A	424	440	Right-handed alpha
Helix 10	AB1	A	442	451	Right-handed alpha
Helix 11	AB2	A	455	469	Right-handed alpha
Helix 12	AB3	A	471	481	Right-handed alpha
Helix 13	AB4	A	486	490	Right-handed 310
Helix 14	AB5	A	491	504	Right-handed alpha
Helix 15	AB6	A	505	508	Right-handed 310
Helix 16	AB7	A	509	519	Right-handed alpha
Helix 17	AB8	A	525	539	Right-handed alpha
Helix 18	AB9	A	541	551	Right-handed alpha
Helix 19	AC1	A	561	574	Right-handed alpha
Helix 20	AC2	A	582	586	Right-handed 310
Helix 21	AC3	B	89	92	Right-handed 310
Helix 22	AC4	B	236	240	Right-handed alpha
Helix 23	AC5	B	243	247	Right-handed 310
Helix 24	AC6	B	294	301	Right-handed 310
Helix 25	AC7	B	347	351	Right-handed 310
Helix 26	AC8	B	360	364	Right-handed 310
Helix 27	AC9	B	371	388	Right-handed alpha
Helix 28	AD1	B	410	421	Right-handed alpha
Helix 29	AD2	B	424	440	Right-handed alpha
Helix 30	AD3	B	442	451	Right-handed alpha
Helix 31	AD4	B	455	468	Right-handed alpha
Helix 32	AD5	B	471	481	Right-handed alpha
Helix 33	AD6	B	486	490	Right-handed 310
Helix 34	AD7	B	491	504	Right-handed alpha
Helix 35	AD8	B	505	508	Right-handed 310
Helix 36	AD9	B	509	519	Right-handed alpha
Helix 37	AE1	B	525	539	Right-handed alpha
Helix 38	AE2	B	541	551	Right-handed alpha
Helix 39	AE3	B	561	574	Right-handed alpha
Helix 40	AE4	B	582	586	Right-handed 310
Helix 41	AE5	C	89	92	Right-handed 310
Helix 42	AE6	C	236	240	Right-handed alpha
Helix 43	AE7	C	243	247	Right-handed 310
Helix 44	AE8	C	294	301	Right-handed 310
Helix 45	AE9	C	347	351	Right-handed 310
Helix 46	AF1	C	360	364	Right-handed 310
Helix 47	AF2	C	371	388	Right-handed alpha
Helix 48	AF3	C	410	421	Right-handed alpha
Helix 49	AF4	C	424	440	Right-handed alpha
Helix 50	AF5	C	442	451	Right-handed alpha
Helix 51	AF6	C	455	468	Right-handed alpha
Helix 52	AF7	C	471	481	Right-handed alpha
Helix 53	AF8	C	486	490	Right-handed 310
Helix 54	AF9	C	491	504	Right-handed alpha
Helix 55	AG1	C	505	519	Right-handed alpha
Helix 56	AG2	C	525	539	Right-handed alpha
Helix 57	AG3	C	541	551	Right-handed alpha
Helix 58	AG4	C	561	574	Right-handed alpha
Helix 59	AG5	C	582	586	Right-handed 310

There are 15 sheets in PDB entry 5CD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	95	100	anti-parallel
Strand 3	A	83	87	anti-parallel
Strand 4	A	69	79	anti-parallel
Strand 5	A	27	37	anti-parallel
Strand 6	A	113	114	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	61	64	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	204	210	anti-parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	285	290	anti-parallel
Strand 5	A	251	255	anti-parallel
Strand 6	A	223	227	anti-parallel
Strand 7	A	231	235	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	171	179	anti-parallel
Strand 4	A	185	192	anti-parallel
Strand 5	A	332	342	anti-parallel
Strand 6	A	273	277	anti-parallel
Strand 7	A	262	266	anti-parallel
Strand 8	A	216	218	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	325	327	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	95	100	anti-parallel
Strand 3	B	83	87	anti-parallel
Strand 4	B	69	79	anti-parallel
Strand 5	B	27	37	anti-parallel
Strand 6	B	113	114	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	61	64	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	204	210	anti-parallel
Strand 3	B	310	316	anti-parallel
Strand 4	B	285	290	anti-parallel
Strand 5	B	251	255	anti-parallel
Strand 6	B	223	227	anti-parallel
Strand 7	B	231	235	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	153	first strand
Strand 2	B	156	164	anti-parallel
Strand 3	B	171	179	anti-parallel
Strand 4	B	185	192	anti-parallel
Strand 5	B	332	342	anti-parallel
Strand 6	B	273	277	anti-parallel
Strand 7	B	262	266	anti-parallel
Strand 8	B	216	218	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	325	327	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	95	100	anti-parallel
Strand 3	C	83	87	anti-parallel
Strand 4	C	69	79	anti-parallel
Strand 5	C	27	37	anti-parallel
Strand 6	C	113	114	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	42	first strand
Strand 2	C	61	64	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	204	210	anti-parallel
Strand 3	C	310	316	anti-parallel
Strand 4	C	285	290	anti-parallel
Strand 5	C	251	255	anti-parallel
Strand 6	C	223	227	anti-parallel
Strand 7	C	231	235	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	156	164	anti-parallel
Strand 3	C	171	179	anti-parallel
Strand 4	C	185	192	anti-parallel
Strand 5	C	332	342	anti-parallel
Strand 6	C	273	277	anti-parallel
Strand 7	C	262	266	anti-parallel
Strand 8	C	216	218	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	325	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CD6