Analysis of interatomic Contacts of Structural Units in PDB entry:
5CD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CD7 entry

There are 6 chains in PDB entry 5CD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 148LYS 224
B
 ARG 150ALA 221
C
 GLY 148SER 222
D
 SER 149ALA 221
E
 PRO 154ALA 221
F
 ASP 155SER 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5CD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 167Right-handed alpha
Helix 2
AA2
A
174 186Right-handed alpha
Helix 3
AA3
A
194 200Right-handed alpha
Helix 4
AA4
B
155 168Right-handed alpha
Helix 5
AA5
B
173 186Right-handed alpha
Helix 6
AA6
B
194 201Right-handed alpha
Helix 7
AA7
C
148 152Right-handed 310
Helix 8
AA8
C
155 168Right-handed alpha
Helix 9
AA9
C
174 186Right-handed alpha
Helix 10
AB1
C
194 202Right-handed alpha
Helix 11
AB2
D
155 168Right-handed alpha
Helix 12
AB3
D
174 186Right-handed alpha
Helix 13
AB4
D
194 200Right-handed alpha
Helix 14
AB5
E
155 167Right-handed alpha
Helix 15
AB6
E
173 186Right-handed alpha
Helix 16
AB7
E
194 200Right-handed alpha
Helix 17
AB8
F
156 168Right-handed alpha
Helix 18
AB9
F
173 186Right-handed alpha
Helix 19
AC1
F
194 202Right-handed alpha
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There are 3 sheets in PDB entry 5CD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
215 219anti-parallel
Strand 3
A
205 209anti-parallel
Strand 4
B
205 209anti-parallel
Strand 5
B
215 219anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
172 173first strand
Strand 2
C
215 219anti-parallel
Strand 3
C
205 209anti-parallel
Strand 4
D
205 209anti-parallel
Strand 5
D
215 219anti-parallel
Strand 6
D
172 173anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
215 219first strand
Strand 2
E
205 209anti-parallel
Strand 3
F
205 209anti-parallel
Strand 4
F
215 219anti-parallel
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