Analysis of interatomic Contacts of Structural Units in PDB entry:
5CD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CD8 entry

There are 6 chains in PDB entry 5CD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 148LEU 223
B
 GLY 148ALA 221
C
 GLY 148ALA 221
D
 GLY 148LYS 220
E
 GLU 152ALA 221
F
 GLY 148LYS 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5CD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
155 168Right-handed alpha
Helix 2
AA2
A
173 186Right-handed alpha
Helix 3
AA3
A
194 202Right-handed alpha
Helix 4
AA4
B
148 152Right-handed 310
Helix 5
AA5
B
155 168Right-handed alpha
Helix 6
AA6
B
173 186Right-handed alpha
Helix 7
AA7
B
194 200Right-handed alpha
Helix 8
AA8
C
155 168Right-handed alpha
Helix 9
AA9
C
173 186Right-handed alpha
Helix 10
AB1
C
194 201Right-handed alpha
Helix 11
AB2
D
149 153Right-handed 310
Helix 12
AB3
D
155 167Right-handed alpha
Helix 13
AB4
D
173 186Right-handed alpha
Helix 14
AB5
D
194 200Right-handed alpha
Helix 15
AB6
E
155 168Right-handed alpha
Helix 16
AB7
E
173 185Right-handed alpha
Helix 17
AB8
E
194 202Right-handed alpha
Helix 18
AB9
F
155 168Right-handed alpha
Helix 19
AC1
F
173 186Right-handed alpha
Helix 20
AC2
F
194 200Right-handed alpha
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There are 3 sheets in PDB entry 5CD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 219first strand
Strand 2
A
205 209anti-parallel
Strand 3
B
206 209anti-parallel
Strand 4
B
215 218anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 219first strand
Strand 2
C
205 209anti-parallel
Strand 3
D
206 209anti-parallel
Strand 4
D
215 218anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
215 219first strand
Strand 2
E
205 209anti-parallel
Strand 3
F
205 209anti-parallel
Strand 4
F
215 219anti-parallel
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