Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CDD entry

There are 3 chains in PDB entry 5CDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1PRO 208
B
 SER 1GLN 301
C
 ASP 59ASP 258
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5CDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
38 44Right-handed 310
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
76 83Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
B
55 61Right-handed alpha
Helix 7
AA7
B
121 128Right-handed alpha
Helix 8
AA8
B
175 179Right-handed 310
Helix 9
AA9
B
227 232Right-handed alpha
Helix 10
AB1
C
60 68Right-handed alpha
Helix 11
AB2
C
96 100Right-handed 310
Helix 12
AB3
C
110 116Right-handed alpha
Helix 13
AB4
C
161 169Right-handed 310
Helix 14
AB5
C
170 175Right-handed alpha
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There are 11 sheets in PDB entry 5CDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
B
202 205parallel
Strand 3
B
132 144anti-parallel
Strand 4
B
255 270anti-parallel
Strand 5
B
64 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
B
202 205parallel
Strand 3
B
132 144anti-parallel
Strand 4
B
214 215anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
176 184anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
140 145anti-parallel
Strand 5
B
30 31parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
166 172anti-parallel
Strand 3
A
110 116anti-parallel
Strand 4
A
131 133anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
87 89anti-parallel
Strand 3
A
189 191anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 108first strand
Strand 2
B
111 118anti-parallel
Strand 3
A
198 205anti-parallel
Strand 4
B
282 283anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
236 247anti-parallel
Strand 3
B
150 159anti-parallel
Strand 4
B
189 194anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 166first strand
Strand 2
B
171 173anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 76first strand
Strand 2
C
237 251anti-parallel
Strand 3
C
126 139anti-parallel
Strand 4
C
189 194anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 76first strand
Strand 2
C
237 251anti-parallel
Strand 3
C
126 139anti-parallel
Strand 4
C
203 204anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 109first strand
Strand 2
C
213 219anti-parallel
Strand 3
C
148 155anti-parallel
Strand 4
C
179 183anti-parallel
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