Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CDF entry

There are 2 chains in PDB entry 5CDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 24ALA 511
E
 ALA 4LEU 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5CDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 104Right-handed 310
Helix 2
AA2
A
150 157Right-handed alpha
Helix 3
AA3
A
174 186Right-handed alpha
Helix 4
AA4
A
187 189Right-handed 310
Helix 5
AA5
A
210 225Right-handed alpha
Helix 6
AA6
A
226 228Right-handed 310
Helix 7
AA7
A
240 261Right-handed alpha
Helix 8
AA8
A
271 286Right-handed alpha
Helix 9
AA9
A
291 295Right-handed 310
Helix 10
AB1
A
298 309Right-handed alpha
Helix 11
AB2
A
314 318Right-handed 310
Helix 12
AB3
A
337 345Right-handed alpha
Helix 13
AB4
A
354 360Right-handed alpha
Helix 14
AB5
A
375 380Right-handed 310
Helix 15
AB6
A
381 389Right-handed alpha
Helix 16
AB7
A
390 406Right-handed alpha
Helix 17
AB8
A
412 430Right-handed alpha
Helix 18
AB9
A
438 451Right-handed alpha
Helix 19
AC1
A
458 460Right-handed 310
Helix 20
AC2
A
461 477Right-handed alpha
Helix 21
AC3
A
477 487Right-handed alpha
Helix 22
AC4
A
493 511Right-handed alpha
Helix 23
AC5
E
82 86Right-handed 310
Helix 24
AC6
E
132 139Right-handed alpha
Helix 25
AC7
E
156 173Right-handed alpha
Helix 26
AC8
E
184 198Right-handed alpha
Helix 27
AC9
E
205 209Right-handed 310
Helix 28
AD1
E
221 244Right-handed alpha
Helix 29
AD2
E
253 268Right-handed alpha
Helix 30
AD3
E
287 292Right-handed alpha
Helix 31
AD4
E
332 338Right-handed alpha
Helix 32
AD5
E
355 360Right-handed alpha
Helix 33
AD6
E
360 380Right-handed alpha
Helix 34
AD7
E
380 387Right-handed alpha
Helix 35
AD8
E
393 411Right-handed alpha
Helix 36
AD9
E
417 422Right-handed alpha
Helix 37
AE1
E
429 443Right-handed alpha
Helix 38
AE2
E
449 454Right-handed 310
Helix 39
AE3
E
458 469Right-handed alpha
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There are 8 sheets in PDB entry 5CDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 66first strand
Strand 2
A
51 54anti-parallel
Strand 3
A
87 94anti-parallel
Strand 4
A
28 35anti-parallel
Strand 5
A
38 43anti-parallel
Strand 6
A
71 75anti-parallel
Strand 7
A
60 66anti-parallel
Strand 8
E
6 12anti-parallel
Strand 9
E
69 72anti-parallel
Strand 10
E
30 35anti-parallel
Strand 11
E
38 47anti-parallel
Strand 12
E
52 57anti-parallel
Strand 13
E
15 20anti-parallel
Strand 14
E
6 12anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
126 128anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
230 235parallel
Strand 3
A
200 207parallel
Strand 4
A
264 270parallel
Strand 5
A
321 329parallel
Strand 6
A
311 312anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
230 235parallel
Strand 3
A
200 207parallel
Strand 4
A
264 270parallel
Strand 5
A
321 329parallel
Strand 6
A
166 169parallel
Strand 7
A
349 353parallel
Strand 8
A
372 373anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 80first strand
Strand 2
E
108 110anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 90first strand
Strand 2
E
211 216parallel
Strand 3
E
176 181parallel
Strand 4
E
246 252parallel
Strand 5
E
298 305parallel
Strand 6
E
294 295anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 90first strand
Strand 2
E
211 216parallel
Strand 3
E
176 181parallel
Strand 4
E
246 252parallel
Strand 5
E
298 305parallel
Strand 6
E
146 150parallel
Strand 7
E
327 330parallel
Strand 8
E
350 351anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 128first strand
Strand 2
E
141 142anti-parallel
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