Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CDH entry

There are 4 chains in PDB entry 5CDH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 25	SER 350
B	MET 25	LYS 351
C	MET 25	LYS 351
D	MET 25	CYS 338

There are101 helices in PDB entry 5CDH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	77	Right-handed alpha
Helix 2	AA2	A	99	114	Right-handed alpha
Helix 3	AA3	A	129	133	Right-handed 310
Helix 4	AA4	A	142	146	Right-handed 310
Helix 5	AA5	A	154	166	Right-handed alpha
Helix 6	AA6	A	169	180	Right-handed alpha
Helix 7	AA7	A	182	191	Right-handed alpha
Helix 8	AA8	A	196	213	Right-handed alpha
Helix 9	AA9	A	222	242	Right-handed alpha
Helix 10	AB1	A	243	267	Right-handed alpha
Helix 11	AB2	A	280	291	Right-handed alpha
Helix 12	AB3	A	340	350	Right-handed alpha
Helix 13	AB4	B	58	77	Right-handed alpha
Helix 14	AB5	B	99	114	Right-handed alpha
Helix 15	AB6	B	129	133	Right-handed 310
Helix 16	AB7	B	142	146	Right-handed 310
Helix 17	AB8	B	154	166	Right-handed alpha
Helix 18	AB9	B	169	180	Right-handed alpha
Helix 19	AC1	B	182	191	Right-handed alpha
Helix 20	AC2	B	196	198	Right-handed 310
Helix 21	AC3	B	199	213	Right-handed alpha
Helix 22	AC4	B	222	242	Right-handed alpha
Helix 23	AC5	B	243	266	Right-handed alpha
Helix 24	AC6	B	280	291	Right-handed alpha
Helix 25	AC7	B	330	334	Right-handed 310
Helix 26	AC8	B	340	350	Right-handed alpha
Helix 27	AC9	C	58	77	Right-handed alpha
Helix 28	AD1	C	99	114	Right-handed alpha
Helix 29	AD2	C	129	133	Right-handed 310
Helix 30	AD3	C	142	146	Right-handed 310
Helix 31	AD4	C	154	166	Right-handed alpha
Helix 32	AD5	C	169	180	Right-handed alpha
Helix 33	AD6	C	182	191	Right-handed alpha
Helix 34	AD7	C	196	213	Right-handed alpha
Helix 35	AD8	C	222	242	Right-handed alpha
Helix 36	AD9	C	243	267	Right-handed alpha
Helix 37	AE1	C	280	291	Right-handed alpha
Helix 38	AE2	C	330	334	Right-handed 310
Helix 39	AE3	C	340	351	Right-handed alpha
Helix 40	AE4	D	58	77	Right-handed alpha
Helix 41	AE5	D	99	114	Right-handed alpha
Helix 42	AE6	D	129	133	Right-handed 310
Helix 43	AE7	D	142	146	Right-handed 310
Helix 44	AE8	D	154	166	Right-handed alpha
Helix 45	AE9	D	169	180	Right-handed alpha
Helix 46	AF1	D	182	191	Right-handed alpha
Helix 47	AF2	D	196	198	Right-handed 310
Helix 48	AF3	D	199	213	Right-handed alpha
Helix 49	AF4	D	222	242	Right-handed alpha
Helix 50	AF5	D	243	266	Right-handed alpha
Helix 51	AF6	D	280	291	Right-handed alpha
Helix 52	AF7	D	330	334	Right-handed 310
Helix 53	AF8	D	340	351	Right-handed alpha
Helix 54	AF9	E	58	77	Right-handed alpha
Helix 55	AG1	E	99	114	Right-handed alpha
Helix 56	AG2	E	129	133	Right-handed 310
Helix 57	AG3	E	142	146	Right-handed 310
Helix 58	AG4	E	154	166	Right-handed alpha
Helix 59	AG5	E	169	180	Right-handed alpha
Helix 60	AG6	E	182	191	Right-handed alpha
Helix 61	AG7	E	196	213	Right-handed alpha
Helix 62	AG8	E	222	242	Right-handed alpha
Helix 63	AG9	E	243	267	Right-handed alpha
Helix 64	AH1	E	280	291	Right-handed alpha
Helix 65	AH2	E	340	350	Right-handed alpha
Helix 66	AH3	F	58	77	Right-handed alpha
Helix 67	AH4	F	99	114	Right-handed alpha
Helix 68	AH5	F	129	133	Right-handed 310
Helix 69	AH6	F	142	146	Right-handed 310
Helix 70	AH7	F	154	166	Right-handed alpha
Helix 71	AH8	F	169	180	Right-handed alpha
Helix 72	AH9	F	182	191	Right-handed alpha
Helix 73	AI1	F	196	213	Right-handed alpha
Helix 74	AI2	F	222	242	Right-handed alpha
Helix 75	AI3	F	243	267	Right-handed alpha
Helix 76	AI4	F	280	291	Right-handed alpha
Helix 77	AI5	F	340	350	Right-handed alpha
Helix 78	AI6	G	58	77	Right-handed alpha
Helix 79	AI7	G	99	114	Right-handed alpha
Helix 80	AI8	G	129	133	Right-handed 310
Helix 81	AI9	G	142	146	Right-handed 310
Helix 82	AJ1	G	154	166	Right-handed alpha
Helix 83	AJ2	G	169	180	Right-handed alpha
Helix 84	AJ3	G	182	191	Right-handed alpha
Helix 85	AJ4	G	196	213	Right-handed alpha
Helix 86	AJ5	G	222	242	Right-handed alpha
Helix 87	AJ6	G	243	266	Right-handed alpha
Helix 88	AJ7	G	280	291	Right-handed alpha
Helix 89	AJ8	G	340	349	Right-handed alpha
Helix 90	AJ9	H	58	77	Right-handed alpha
Helix 91	AK1	H	99	114	Right-handed alpha
Helix 92	AK2	H	129	133	Right-handed 310
Helix 93	AK3	H	142	146	Right-handed 310
Helix 94	AK4	H	154	166	Right-handed alpha
Helix 95	AK5	H	169	180	Right-handed alpha
Helix 96	AK6	H	182	191	Right-handed alpha
Helix 97	AK7	H	196	213	Right-handed alpha
Helix 98	AK8	H	222	242	Right-handed alpha
Helix 99	AK9	H	243	267	Right-handed alpha
Helix 100	AL1	H	280	291	Right-handed alpha
Helix 101	AL2	H	340	350	Right-handed alpha

There are 16 sheets in PDB entry 5CDH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	92	96	parallel
Strand 3	A	274	279	parallel
Strand 4	A	27	33	parallel
Strand 5	A	304	311	anti-parallel
Strand 6	A	317	323	anti-parallel
Strand 7	A	326	327	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	92	96	parallel
Strand 3	A	274	279	parallel
Strand 4	A	27	33	parallel
Strand 5	A	304	311	anti-parallel
Strand 6	A	317	323	anti-parallel
Strand 7	A	337	339	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	92	96	parallel
Strand 3	B	274	279	parallel
Strand 4	B	27	33	parallel
Strand 5	B	304	311	anti-parallel
Strand 6	B	317	323	anti-parallel
Strand 7	B	326	327	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	140	first strand
Strand 2	B	92	96	parallel
Strand 3	B	274	279	parallel
Strand 4	B	27	33	parallel
Strand 5	B	304	311	anti-parallel
Strand 6	B	317	323	anti-parallel
Strand 7	B	337	339	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	92	96	parallel
Strand 3	C	274	279	parallel
Strand 4	C	27	33	parallel
Strand 5	C	304	311	anti-parallel
Strand 6	C	317	323	anti-parallel
Strand 7	C	326	327	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	92	96	parallel
Strand 3	C	274	279	parallel
Strand 4	C	27	33	parallel
Strand 5	C	304	311	anti-parallel
Strand 6	C	317	323	anti-parallel
Strand 7	C	337	339	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	92	96	parallel
Strand 3	D	274	279	parallel
Strand 4	D	27	33	parallel
Strand 5	D	304	311	anti-parallel
Strand 6	D	317	323	anti-parallel
Strand 7	D	326	327	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	140	first strand
Strand 2	D	92	96	parallel
Strand 3	D	274	279	parallel
Strand 4	D	27	33	parallel
Strand 5	D	304	311	anti-parallel
Strand 6	D	317	323	anti-parallel
Strand 7	D	337	339	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	92	96	parallel
Strand 3	E	274	279	parallel
Strand 4	E	27	33	parallel
Strand 5	E	304	311	anti-parallel
Strand 6	E	317	323	anti-parallel
Strand 7	E	326	327	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	140	first strand
Strand 2	E	92	96	parallel
Strand 3	E	274	279	parallel
Strand 4	E	27	33	parallel
Strand 5	E	304	311	anti-parallel
Strand 6	E	317	323	anti-parallel
Strand 7	E	337	339	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	140	first strand
Strand 2	F	92	96	parallel
Strand 3	F	274	279	parallel
Strand 4	F	27	33	parallel
Strand 5	F	304	311	anti-parallel
Strand 6	F	317	323	anti-parallel
Strand 7	F	326	327	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	140	first strand
Strand 2	F	92	96	parallel
Strand 3	F	274	279	parallel
Strand 4	F	27	33	parallel
Strand 5	F	304	311	anti-parallel
Strand 6	F	317	323	anti-parallel
Strand 7	F	337	339	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	92	96	parallel
Strand 3	G	274	279	parallel
Strand 4	G	27	33	parallel
Strand 5	G	304	311	anti-parallel
Strand 6	G	317	323	anti-parallel
Strand 7	G	326	327	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	140	first strand
Strand 2	G	92	96	parallel
Strand 3	G	274	279	parallel
Strand 4	G	27	33	parallel
Strand 5	G	304	311	anti-parallel
Strand 6	G	317	323	anti-parallel
Strand 7	G	337	339	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	92	96	parallel
Strand 3	H	274	279	parallel
Strand 4	H	27	33	parallel
Strand 5	H	304	311	anti-parallel
Strand 6	H	317	323	anti-parallel
Strand 7	H	326	327	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	139	140	first strand
Strand 2	H	92	96	parallel
Strand 3	H	274	279	parallel
Strand 4	H	27	33	parallel
Strand 5	H	304	311	anti-parallel
Strand 6	H	317	323	anti-parallel
Strand 7	H	337	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CDH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDH