Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CDJ entry

There are 2 chains in PDB entry 5CDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 192SER 373
B
 GLY 192GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5CDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
201 205Right-handed 310
Helix 2
AA2
A
229 242Right-handed alpha
Helix 3
AA3
A
255 268Right-handed alpha
Helix 4
AA4
A
281 297Right-handed alpha
Helix 5
AA5
A
302 306Right-handed 310
Helix 6
AA6
A
308 312Right-handed 310
Helix 7
AA7
A
313 317Right-handed 310
Helix 8
AA8
A
338 356Right-handed alpha
Helix 9
AA9
A
358 373Right-handed alpha
Helix 10
AB1
B
201 205Right-handed 310
Helix 11
AB2
B
229 243Right-handed alpha
Helix 12
AB3
B
255 268Right-handed alpha
Helix 13
AB4
B
281 297Right-handed alpha
Helix 14
AB5
B
302 306Right-handed 310
Helix 15
AB6
B
308 312Right-handed 310
Helix 16
AB7
B
313 317Right-handed 310
Helix 17
AB8
B
338 355Right-handed alpha
Helix 18
AB9
B
358 373Right-handed alpha
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There are 5 sheets in PDB entry 5CDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
330 333anti-parallel
Strand 3
A
318 325anti-parallel
Strand 4
A
213 223anti-parallel
Strand 5
A
247 251parallel
Strand 6
A
273 277parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
330 333anti-parallel
Strand 3
A
318 325anti-parallel
Strand 4
A
213 223anti-parallel
Strand 5
A
300 301parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
253 254parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
330 334anti-parallel
Strand 3
B
318 325anti-parallel
Strand 4
B
213 222anti-parallel
Strand 5
B
247 251parallel
Strand 6
B
273 277parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 227first strand
Strand 2
B
253 254parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il