Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CDN entry

There are 6 chains in PDB entry 5CDN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	ARG 122
A	THR 124	LEU 490
B	LYS 417	VAL 638
C	GLU 11	ARG 122
C	THR 124	LEU 490
D	LYS 417	GLY 582

There are120 helices in PDB entry 5CDN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	32	Right-handed alpha
Helix 2	AA2	A	43	56	Right-handed alpha
Helix 3	AA3	A	67	78	Right-handed alpha
Helix 4	AA4	A	82	95	Right-handed alpha
Helix 5	AA5	A	120	123	Right-handed 310
Helix 6	AA6	A	132	137	Right-handed alpha
Helix 7	AA7	A	165	171	Right-handed alpha
Helix 8	AA8	A	187	201	Right-handed alpha
Helix 9	AA9	A	205	210	Right-handed alpha
Helix 10	AB1	A	227	237	Right-handed alpha
Helix 11	AB2	A	269	283	Right-handed alpha
Helix 12	AB3	A	313	325	Right-handed alpha
Helix 13	AB4	A	347	390	Right-handed alpha
Helix 14	AB5	A	390	400	Right-handed alpha
Helix 15	AB6	A	403	415	Right-handed alpha
Helix 16	AB7	A	418	427	Right-handed alpha
Helix 17	AB8	A	429	433	Right-handed 310
Helix 18	AB9	A	434	461	Right-handed alpha
Helix 19	AC1	A	461	481	Right-handed alpha
Helix 20	AC2	B	436	447	Right-handed alpha
Helix 21	AC3	B	468	475	Right-handed alpha
Helix 22	AC4	B	475	486	Right-handed alpha
Helix 23	AC5	B	489	493	Right-handed 310
Helix 24	AC6	B	494	498	Right-handed 310
Helix 25	AC7	B	510	528	Right-handed alpha
Helix 26	AC8	B	528	534	Right-handed alpha
Helix 27	AC9	B	587	596	Right-handed alpha
Helix 28	AD1	B	610	623	Right-handed alpha
Helix 29	AD2	B	625	637	Right-handed alpha
Helix 30	AD3	C	14	32	Right-handed alpha
Helix 31	AD4	C	43	56	Right-handed alpha
Helix 32	AD5	C	67	78	Right-handed alpha
Helix 33	AD6	C	82	95	Right-handed alpha
Helix 34	AD7	C	120	123	Right-handed 310
Helix 35	AD8	C	132	137	Right-handed alpha
Helix 36	AD9	C	165	171	Right-handed alpha
Helix 37	AE1	C	187	201	Right-handed alpha
Helix 38	AE2	C	205	210	Right-handed alpha
Helix 39	AE3	C	227	237	Right-handed alpha
Helix 40	AE4	C	253	255	Right-handed 310
Helix 41	AE5	C	269	283	Right-handed alpha
Helix 42	AE6	C	313	325	Right-handed alpha
Helix 43	AE7	C	347	390	Right-handed alpha
Helix 44	AE8	C	390	400	Right-handed alpha
Helix 45	AE9	C	403	415	Right-handed alpha
Helix 46	AF1	C	418	427	Right-handed alpha
Helix 47	AF2	C	429	433	Right-handed 310
Helix 48	AF3	C	434	461	Right-handed alpha
Helix 49	AF4	C	461	481	Right-handed alpha
Helix 50	AF5	D	436	447	Right-handed alpha
Helix 51	AF6	D	468	475	Right-handed alpha
Helix 52	AF7	D	475	486	Right-handed alpha
Helix 53	AF8	D	489	493	Right-handed 310
Helix 54	AF9	D	494	498	Right-handed 310
Helix 55	AG1	D	510	528	Right-handed alpha
Helix 56	AG2	D	528	534	Right-handed alpha
Helix 57	AG3	D	582	586	Right-handed 310
Helix 58	AG4	D	587	596	Right-handed alpha
Helix 59	AG5	D	610	623	Right-handed alpha
Helix 60	AG6	D	625	637	Right-handed alpha
Helix 61	AG7	R	14	32	Right-handed alpha
Helix 62	AG8	R	43	56	Right-handed alpha
Helix 63	AG9	R	67	78	Right-handed alpha
Helix 64	AH1	R	82	95	Right-handed alpha
Helix 65	AH2	R	120	123	Right-handed 310
Helix 66	AH3	R	132	137	Right-handed alpha
Helix 67	AH4	R	165	171	Right-handed alpha
Helix 68	AH5	R	187	201	Right-handed alpha
Helix 69	AH6	R	205	210	Right-handed alpha
Helix 70	AH7	R	227	237	Right-handed alpha
Helix 71	AH8	R	269	283	Right-handed alpha
Helix 72	AH9	R	316	325	Right-handed alpha
Helix 73	AI1	R	347	390	Right-handed alpha
Helix 74	AI2	R	390	400	Right-handed alpha
Helix 75	AI3	R	403	415	Right-handed alpha
Helix 76	AI4	R	418	427	Right-handed alpha
Helix 77	AI5	R	429	433	Right-handed 310
Helix 78	AI6	R	434	461	Right-handed alpha
Helix 79	AI7	R	461	481	Right-handed alpha
Helix 80	AI8	S	436	447	Right-handed alpha
Helix 81	AI9	S	468	475	Right-handed alpha
Helix 82	AJ1	S	475	486	Right-handed alpha
Helix 83	AJ2	S	489	493	Right-handed 310
Helix 84	AJ3	S	494	498	Right-handed 310
Helix 85	AJ4	S	510	528	Right-handed alpha
Helix 86	AJ5	S	528	534	Right-handed alpha
Helix 87	AJ6	S	582	586	Right-handed 310
Helix 88	AJ7	S	587	596	Right-handed alpha
Helix 89	AJ8	S	610	623	Right-handed alpha
Helix 90	AJ9	S	626	636	Right-handed alpha
Helix 91	AK1	T	14	32	Right-handed alpha
Helix 92	AK2	T	43	56	Right-handed alpha
Helix 93	AK3	T	67	78	Right-handed alpha
Helix 94	AK4	T	82	95	Right-handed alpha
Helix 95	AK5	T	120	123	Right-handed 310
Helix 96	AK6	T	132	137	Right-handed alpha
Helix 97	AK7	T	165	171	Right-handed alpha
Helix 98	AK8	T	187	201	Right-handed alpha
Helix 99	AK9	T	205	210	Right-handed alpha
Helix 100	AL1	T	227	237	Right-handed alpha
Helix 101	AL2	T	269	283	Right-handed alpha
Helix 102	AL3	T	313	325	Right-handed alpha
Helix 103	AL4	T	347	390	Right-handed alpha
Helix 104	AL5	T	390	400	Right-handed alpha
Helix 105	AL6	T	403	415	Right-handed alpha
Helix 106	AL7	T	418	427	Right-handed alpha
Helix 107	AL8	T	429	433	Right-handed 310
Helix 108	AL9	T	434	461	Right-handed alpha
Helix 109	AM1	T	461	481	Right-handed alpha
Helix 110	AM2	U	436	447	Right-handed alpha
Helix 111	AM3	U	468	475	Right-handed alpha
Helix 112	AM4	U	475	486	Right-handed alpha
Helix 113	AM5	U	489	493	Right-handed 310
Helix 114	AM6	U	494	498	Right-handed 310
Helix 115	AM7	U	510	528	Right-handed alpha
Helix 116	AM8	U	528	534	Right-handed alpha
Helix 117	AM9	U	582	586	Right-handed 310
Helix 118	AN1	U	587	596	Right-handed alpha
Helix 119	AN2	U	610	623	Right-handed alpha
Helix 120	AN3	U	625	637	Right-handed alpha

There are 28 sheets in PDB entry 5CDN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	B	604	607	parallel
Strand 3	B	537	539	anti-parallel
Strand 4	B	502	506	parallel
Strand 5	B	430	435	parallel
Strand 6	B	452	457	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	125	128	anti-parallel
Strand 3	A	104	107	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	155	157	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	175	first strand
Strand 2	A	180	183	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	334	first strand
Strand 2	A	238	244	anti-parallel
Strand 3	A	223	225	anti-parallel
Strand 4	A	487	489	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	250	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	304	308	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	A	342	345	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	13	first strand
Strand 2	D	604	607	parallel
Strand 3	D	537	539	anti-parallel
Strand 4	D	502	506	parallel
Strand 5	D	430	435	parallel
Strand 6	D	452	457	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	125	128	anti-parallel
Strand 3	C	104	107	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	155	157	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	175	first strand
Strand 2	C	180	183	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	334	first strand
Strand 2	C	238	244	anti-parallel
Strand 3	C	223	225	anti-parallel
Strand 4	C	487	489	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	251	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	304	308	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	339	first strand
Strand 2	C	342	345	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	13	first strand
Strand 2	S	604	607	parallel
Strand 3	S	537	539	anti-parallel
Strand 4	S	502	506	parallel
Strand 5	S	430	435	parallel
Strand 6	S	452	457	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	66	first strand
Strand 2	R	125	128	anti-parallel
Strand 3	R	104	107	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	146	148	first strand
Strand 2	R	155	157	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	172	175	first strand
Strand 2	R	180	183	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	328	334	first strand
Strand 2	R	238	244	anti-parallel
Strand 3	R	223	225	anti-parallel
Strand 4	R	487	489	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	246	250	first strand
Strand 2	R	258	263	anti-parallel
Strand 3	R	304	308	anti-parallel
Strand 4	R	289	294	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	336	339	first strand
Strand 2	R	342	345	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	11	13	first strand
Strand 2	U	604	607	parallel
Strand 3	U	537	539	anti-parallel
Strand 4	U	502	506	parallel
Strand 5	U	430	435	parallel
Strand 6	U	452	457	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	65	66	first strand
Strand 2	T	125	128	anti-parallel
Strand 3	T	104	107	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	146	148	first strand
Strand 2	T	155	157	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	172	175	first strand
Strand 2	T	180	183	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	328	334	first strand
Strand 2	T	238	244	anti-parallel
Strand 3	T	223	225	anti-parallel
Strand 4	T	487	489	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	246	250	first strand
Strand 2	T	258	263	anti-parallel
Strand 3	T	304	308	anti-parallel
Strand 4	T	289	294	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	336	339	first strand
Strand 2	T	342	345	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CDN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDN