Analysis of interatomic Contacts of Structural Units in PDB entry:
5CDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CDX entry

There is 1 chain in PDB entry 5CDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -4PRO 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5CDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 23Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
66 78Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
123 137Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
231 238Right-handed alpha
Helix 9
AA9
A
240 251Right-handed alpha
Helix 10
AB1
A
271 276Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
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There are 3 sheets in PDB entry 5CDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
352 358anti-parallel
Strand 3
A
340 346anti-parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
209 216anti-parallel
Strand 6
A
187 204anti-parallel
Strand 7
A
176 181anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
352 358anti-parallel
Strand 3
A
340 346anti-parallel
Strand 4
A
220 227anti-parallel
Strand 5
A
209 216anti-parallel
Strand 6
A
187 204anti-parallel
Strand 7
A
252 261anti-parallel
Strand 8
A
333 335parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
87 94parallel
Strand 3
A
154 162anti-parallel
Strand 4
A
302 311parallel
Strand 5
A
263 270anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il