Analysis of interatomic Contacts of Structural Units in PDB entry:
5CE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CE0 entry

There are 2 chains in PDB entry 5CE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -5PRO 361
B
 GLN -4PRO 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5CE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 23Right-handed alpha
Helix 2
AA2
A
31 43Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
66 78Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
121 137Right-handed alpha
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
231 238Right-handed alpha
Helix 9
AA9
A
240 251Right-handed alpha
Helix 10
AB1
A
271 277Right-handed alpha
Helix 11
AB2
A
281 285Right-handed 310
Helix 12
AB3
B
0 23Right-handed alpha
Helix 13
AB4
B
31 43Right-handed alpha
Helix 14
AB5
B
47 59Right-handed alpha
Helix 15
AB6
B
66 78Right-handed alpha
Helix 16
AB7
B
100 112Right-handed alpha
Helix 17
AB8
B
121 137Right-handed alpha
Helix 18
AB9
B
171 175Right-handed 310
Helix 19
AC1
B
231 238Right-handed alpha
Helix 20
AC2
B
240 251Right-handed alpha
Helix 21
AC3
B
271 275Right-handed alpha
Helix 22
AC4
B
276 279Right-handed 310
Helix 23
AC5
B
281 285Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 5CE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
352 358anti-parallel
Strand 3
B
340 346anti-parallel
Strand 4
B
220 227anti-parallel
Strand 5
B
209 217anti-parallel
Strand 6
B
186 204anti-parallel
Strand 7
A
186 204anti-parallel
Strand 8
A
209 216anti-parallel
Strand 9
A
220 227anti-parallel
Strand 10
A
340 346anti-parallel
Strand 11
A
352 358anti-parallel
Strand 12
A
28 30anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
186 204anti-parallel
Strand 3
A
252 261anti-parallel
Strand 4
A
333 335parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
252 261parallel
Strand 3
B
186 204anti-parallel
Strand 4
B
176 181anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
209 217anti-parallel
Strand 3
B
186 204anti-parallel
Strand 4
B
176 181anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
87 94parallel
Strand 3
A
154 162anti-parallel
Strand 4
A
302 311parallel
Strand 5
A
263 270anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
86 94parallel
Strand 3
B
154 162anti-parallel
Strand 4
B
302 311parallel
Strand 5
B
263 270anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il