Analysis of interatomic Contacts of Structural Units in PDB entry:
5CE3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CE3 entry

There are 3 chains in PDB entry 5CE3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	CYS 374
B	LYS 108	MET 729
C	VAL 5	SER 338

There are 91 helices in PDB entry 5CE3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	78	92	Right-handed alpha
Helix 3	AA3	A	112	126	Right-handed alpha
Helix 4	AA4	A	137	145	Right-handed alpha
Helix 5	AA5	A	172	175	Right-handed 310
Helix 6	AA6	A	181	194	Right-handed alpha
Helix 7	AA7	A	195	197	Right-handed 310
Helix 8	AA8	A	202	217	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	260	Right-handed alpha
Helix 11	AB2	A	261	262	Right-handed 310
Helix 12	AB3	A	263	268	Right-handed 310
Helix 13	AB4	A	273	284	Right-handed alpha
Helix 14	AB5	A	286	295	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed 310
Helix 16	AB7	A	308	321	Right-handed alpha
Helix 17	AB8	A	334	336	Right-handed 310
Helix 18	AB9	A	337	349	Right-handed alpha
Helix 19	AC1	A	350	355	Right-handed 310
Helix 20	AC2	A	359	366	Right-handed alpha
Helix 21	AC3	A	369	374	Right-handed alpha
Helix 22	AC4	B	109	113	Right-handed 310
Helix 23	AC5	B	168	185	Right-handed alpha
Helix 24	AC6	B	219	232	Right-handed alpha
Helix 25	AC7	B	236	262	Right-handed alpha
Helix 26	AC8	B	269	271	Right-handed 310
Helix 27	AC9	B	317	335	Right-handed alpha
Helix 28	AD1	B	336	339	Right-handed 310
Helix 29	AD2	B	343	347	Right-handed 310
Helix 30	AD3	B	376	387	Right-handed alpha
Helix 31	AD4	B	395	400	Right-handed alpha
Helix 32	AD5	B	402	408	Right-handed alpha
Helix 33	AD6	B	411	425	Right-handed alpha
Helix 34	AD7	B	438	458	Right-handed alpha
Helix 35	AD8	B	462	483	Right-handed alpha
Helix 36	AD9	B	487	508	Right-handed alpha
Helix 37	AE1	B	531	549	Right-handed alpha
Helix 38	AE2	B	552	554	Right-handed 310
Helix 39	AE3	B	555	580	Right-handed alpha
Helix 40	AE4	B	584	627	Right-handed alpha
Helix 41	AE5	B	629	643	Right-handed alpha
Helix 42	AE6	B	655	673	Right-handed alpha
Helix 43	AE7	B	676	695	Right-handed alpha
Helix 44	AE8	B	701	723	Right-handed alpha
Helix 45	AE9	B	723	729	Right-handed alpha
Helix 46	AF1	C	55	61	Right-handed alpha
Helix 47	AF2	C	78	92	Right-handed alpha
Helix 48	AF3	C	112	126	Right-handed alpha
Helix 49	AF4	C	137	145	Right-handed alpha
Helix 50	AF5	C	172	175	Right-handed 310
Helix 51	AF6	C	181	194	Right-handed alpha
Helix 52	AF7	C	195	197	Right-handed 310
Helix 53	AF8	C	202	217	Right-handed alpha
Helix 54	AF9	C	222	233	Right-handed alpha
Helix 55	AG1	C	252	260	Right-handed alpha
Helix 56	AG2	C	261	262	Right-handed 310
Helix 57	AG3	C	263	268	Right-handed 310
Helix 58	AG4	C	273	284	Right-handed alpha
Helix 59	AG5	C	286	295	Right-handed alpha
Helix 60	AG6	C	301	305	Right-handed 310
Helix 61	AG7	C	308	321	Right-handed alpha
Helix 62	AG8	C	334	336	Right-handed 310
Helix 63	AG9	C	337	349	Right-handed alpha
Helix 64	AH1	C	350	355	Right-handed 310
Helix 65	AH2	C	359	365	Right-handed alpha
Helix 66	AH3	C	366	368	Right-handed 310
Helix 67	AH4	C	369	374	Right-handed alpha
Helix 68	AH5	D	109	113	Right-handed 310
Helix 69	AH6	D	168	185	Right-handed alpha
Helix 70	AH7	D	219	232	Right-handed alpha
Helix 71	AH8	D	236	262	Right-handed alpha
Helix 72	AH9	D	269	271	Right-handed 310
Helix 73	AI1	D	317	335	Right-handed alpha
Helix 74	AI2	D	336	339	Right-handed 310
Helix 75	AI3	D	343	347	Right-handed 310
Helix 76	AI4	D	376	387	Right-handed alpha
Helix 77	AI5	D	395	400	Right-handed alpha
Helix 78	AI6	D	402	408	Right-handed alpha
Helix 79	AI7	D	411	425	Right-handed alpha
Helix 80	AI8	D	438	458	Right-handed alpha
Helix 81	AI9	D	462	483	Right-handed alpha
Helix 82	AJ1	D	487	508	Right-handed alpha
Helix 83	AJ2	D	531	549	Right-handed alpha
Helix 84	AJ3	D	552	554	Right-handed 310
Helix 85	AJ4	D	555	580	Right-handed alpha
Helix 86	AJ5	D	584	627	Right-handed alpha
Helix 87	AJ6	D	629	643	Right-handed alpha
Helix 88	AJ7	D	655	673	Right-handed alpha
Helix 89	AJ8	D	676	695	Right-handed alpha
Helix 90	AJ9	D	701	723	Right-handed alpha
Helix 91	AK1	D	723	729	Right-handed alpha

There are 22 sheets in PDB entry 5CE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	75	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	250	first strand
Strand 2	A	238	241	anti-parallel
Strand 3	B	647	648	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	193	201	anti-parallel
Strand 3	B	204	212	anti-parallel
Strand 4	B	157	161	anti-parallel
Strand 5	B	146	150	anti-parallel
Strand 6	B	132	137	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	273	276	anti-parallel
Strand 3	B	282	284	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	291	292	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	371	372	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	359	first strand
Strand 2	B	365	367	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	16	21	anti-parallel
Strand 3	C	8	12	anti-parallel
Strand 4	C	103	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	357	358	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	65	68	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	75	76	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	176	178	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	170	first strand
Strand 2	C	160	166	anti-parallel
Strand 3	C	150	155	anti-parallel
Strand 4	C	297	300	parallel
Strand 5	C	329	330	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	250	first strand
Strand 2	C	238	241	anti-parallel
Strand 3	D	647	648	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	118	first strand
Strand 2	D	193	201	anti-parallel
Strand 3	D	204	212	anti-parallel
Strand 4	D	157	161	anti-parallel
Strand 5	D	146	150	anti-parallel
Strand 6	D	132	137	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	273	276	anti-parallel
Strand 3	D	282	284	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	264	first strand
Strand 2	D	291	292	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	371	372	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	359	first strand
Strand 2	D	365	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CE3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CE3