Analysis of interatomic Contacts of Structural Units in PDB entry:
5CE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CE6 entry

There is 1 chain in PDB entry 5CE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22SER 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5CE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 42Right-handed alpha
Helix 2
AA2
A
67 78Right-handed alpha
Helix 3
AA3
A
98 106Right-handed alpha
Helix 4
AA4
A
108 117Right-handed alpha
Helix 5
AA5
A
131 145Right-handed alpha
Helix 6
AA6
A
166 179Right-handed alpha
Helix 7
AA7
A
186 196Right-handed alpha
Helix 8
AA8
A
198 219Right-handed alpha
Helix 9
AA9
A
219 230Right-handed alpha
Helix 10
AB1
A
235 249Right-handed alpha
Helix 11
AB2
A
250 254Right-handed 310
Helix 12
AB3
A
258 260Right-handed 310
Helix 13
AB4
A
321 342Right-handed alpha
Helix 14
AB5
A
347 363Right-handed alpha
Helix 15
AB6
A
364 370Right-handed 310
Helix 16
AB7
A
384 388Right-handed 310
Helix 17
AB8
A
449 453Right-handed alpha
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There are 4 sheets in PDB entry 5CE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
92 97parallel
Strand 3
A
84 88anti-parallel
Strand 4
A
52 57anti-parallel
Strand 5
A
155 158parallel
Strand 6
A
182 185parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
303 305anti-parallel
Strand 3
A
308 309anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 272first strand
Strand 2
A
295 301anti-parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
454 455parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
402 413anti-parallel
Strand 3
A
423 434anti-parallel
Strand 4
A
439 441anti-parallel
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