Analysis of interatomic Contacts of Structural Units in PDB entry:
5CE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CE8 entry

There are 3 chains in PDB entry 5CE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 295
B
 SER 0TYR 295
C
 MET 1TYR 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 5CE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 15Right-handed 310
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
47 63Right-handed alpha
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
151 153Right-handed 310
Helix 6
AA6
A
154 168Right-handed alpha
Helix 7
AA7
A
202 206Right-handed 310
Helix 8
AA8
A
210 224Right-handed alpha
Helix 9
AA9
A
233 239Right-handed alpha
Helix 10
AB1
A
266 281Right-handed alpha
Helix 11
AB2
A
284 289Right-handed 310
Helix 12
AB3
B
13 15Right-handed 310
Helix 13
AB4
B
21 27Right-handed alpha
Helix 14
AB5
B
47 63Right-handed alpha
Helix 15
AB6
B
69 84Right-handed alpha
Helix 16
AB7
B
151 153Right-handed 310
Helix 17
AB8
B
154 168Right-handed alpha
Helix 18
AB9
B
202 206Right-handed 310
Helix 19
AC1
B
210 224Right-handed alpha
Helix 20
AC2
B
233 240Right-handed alpha
Helix 21
AC3
B
266 281Right-handed alpha
Helix 22
AC4
B
284 289Right-handed 310
Helix 23
AC5
C
13 15Right-handed 310
Helix 24
AC6
C
21 27Right-handed alpha
Helix 25
AC7
C
47 63Right-handed alpha
Helix 26
AC8
C
69 84Right-handed alpha
Helix 27
AC9
C
151 153Right-handed 310
Helix 28
AD1
C
154 168Right-handed alpha
Helix 29
AD2
C
202 206Right-handed 310
Helix 30
AD3
C
210 224Right-handed alpha
Helix 31
AD4
C
233 239Right-handed alpha
Helix 32
AD5
C
266 281Right-handed alpha
Helix 33
AD6
C
284 289Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 5CE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
113 120anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
29 31anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
113 120anti-parallel
Strand 4
A
90 97anti-parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
43 46anti-parallel
Strand 7
A
291 293anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
130 134parallel
Strand 4
A
251 258parallel
Strand 5
A
242 247anti-parallel
Strand 6
A
189 194anti-parallel
Strand 7
A
197 200anti-parallel
Strand 8
A
227 229parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 185first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
130 134parallel
Strand 4
A
251 258parallel
Strand 5
A
261 262anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
2 5anti-parallel
Strand 3
B
113 120anti-parallel
Strand 4
B
90 97anti-parallel
Strand 5
B
30 31anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
2 5anti-parallel
Strand 3
B
113 120anti-parallel
Strand 4
B
90 97anti-parallel
Strand 5
B
34 38anti-parallel
Strand 6
B
43 46anti-parallel
Strand 7
B
291 293anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
172 176anti-parallel
Strand 3
B
130 134parallel
Strand 4
B
251 258parallel
Strand 5
B
242 247anti-parallel
Strand 6
B
189 194anti-parallel
Strand 7
B
197 200anti-parallel
Strand 8
B
227 229parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
172 176anti-parallel
Strand 3
B
130 134parallel
Strand 4
B
251 258parallel
Strand 5
B
261 262anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 11first strand
Strand 2
C
2 5anti-parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
90 97anti-parallel
Strand 5
C
30 31anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 11first strand
Strand 2
C
2 5anti-parallel
Strand 3
C
113 120anti-parallel
Strand 4
C
90 97anti-parallel
Strand 5
C
34 38anti-parallel
Strand 6
C
43 46anti-parallel
Strand 7
C
291 293anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 185first strand
Strand 2
C
172 176anti-parallel
Strand 3
C
130 138parallel
Strand 4
C
251 258parallel
Strand 5
C
242 247anti-parallel
Strand 6
C
189 194anti-parallel
Strand 7
C
197 200anti-parallel
Strand 8
C
227 229parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 185first strand
Strand 2
C
172 176anti-parallel
Strand 3
C
130 138parallel
Strand 4
C
251 258parallel
Strand 5
C
261 262anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il