Analysis of interatomic Contacts of Structural Units in PDB entry:
5CE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CE9 entry

There are 2 chains in PDB entry 5CE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1LYS 339
B
 ASP 1ASP 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5CE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
79 92Right-handed alpha
Helix 5
AA5
A
112 132Right-handed alpha
Helix 6
AA6
A
146 150Right-handed 310
Helix 7
AA7
A
153 158Right-handed 310
Helix 8
AA8
A
169 173Right-handed 310
Helix 9
AA9
A
193 207Right-handed alpha
Helix 10
AB1
A
212 218Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
238 247Right-handed alpha
Helix 13
AB4
A
259 264Right-handed alpha
Helix 14
AB5
A
265 267Right-handed 310
Helix 15
AB6
A
268 284Right-handed alpha
Helix 16
AB7
A
295 300Right-handed alpha
Helix 17
AB8
A
318 320Right-handed 310
Helix 18
AB9
A
322 326Right-handed 310
Helix 19
AC1
A
335 339Right-handed 310
Helix 20
AC2
B
7 11Right-handed 310
Helix 21
AC3
B
50 54Right-handed 310
Helix 22
AC4
B
55 71Right-handed alpha
Helix 23
AC5
B
79 92Right-handed alpha
Helix 24
AC6
B
112 132Right-handed alpha
Helix 25
AC7
B
146 150Right-handed 310
Helix 26
AC8
B
153 158Right-handed 310
Helix 27
AC9
B
169 173Right-handed 310
Helix 28
AD1
B
193 207Right-handed alpha
Helix 29
AD2
B
212 218Right-handed alpha
Helix 30
AD3
B
232 237Right-handed alpha
Helix 31
AD4
B
238 247Right-handed alpha
Helix 32
AD5
B
259 264Right-handed alpha
Helix 33
AD6
B
265 267Right-handed 310
Helix 34
AD7
B
268 284Right-handed alpha
Helix 35
AD8
B
295 300Right-handed alpha
Helix 36
AD9
B
318 320Right-handed 310
Helix 37
AE1
B
322 326Right-handed 310
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There are 5 sheets in PDB entry 5CE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
312 316parallel
Strand 3
A
302 306anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
328 330parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
312 316parallel
Strand 3
B
302 306anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
328 330parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
100 104anti-parallel
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