Analysis of interatomic Contacts of Structural Units in PDB entry:
5CED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CED entry

There are 2 chains in PDB entry 5CED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 38ALA 438
B
 GLY 27LYS 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5CED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 85Right-handed alpha
Helix 2
AA2
A
117 131Right-handed alpha
Helix 3
AA3
A
171 181Right-handed alpha
Helix 4
AA4
A
187 201Right-handed alpha
Helix 5
AA5
A
220 224Right-handed 310
Helix 6
AA6
A
239 250Right-handed alpha
Helix 7
AA7
A
253 263Right-handed alpha
Helix 8
AA8
A
264 278Right-handed alpha
Helix 9
AA9
A
306 323Right-handed alpha
Helix 10
AB1
A
327 331Right-handed 310
Helix 11
AB2
A
347 351Right-handed 310
Helix 12
AB3
A
393 412Right-handed alpha
Helix 13
AB4
B
30 40Right-handed alpha
Helix 14
AB5
B
41 51Right-handed alpha
Helix 15
AB6
B
65 73Right-handed alpha
Helix 16
AB7
B
75 85Right-handed alpha
Helix 17
AB8
B
98 106Right-handed alpha
Helix 18
AB9
B
108 118Right-handed alpha
Helix 19
AC1
B
133 140Right-handed alpha
Helix 20
AC2
B
142 153Right-handed alpha
Helix 21
AC3
B
154 159Right-handed 310
Helix 22
AC4
B
166 175Right-handed alpha
Helix 23
AC5
B
176 186Right-handed alpha
Helix 24
AC6
B
199 207Right-handed alpha
Helix 25
AC7
B
209 219Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5CED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
40 48anti-parallel
Strand 3
A
376 385anti-parallel
Strand 4
A
364 373anti-parallel
Strand 5
A
354 361anti-parallel
Strand 6
A
333 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
304 305anti-parallel
Strand 3
A
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 218first strand
Strand 2
A
135 141parallel
Strand 3
A
103 109parallel
Strand 4
A
91 99anti-parallel
Strand 5
A
231 236anti-parallel
Strand 6
A
436 437anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il