Analysis of interatomic Contacts of Structural Units in PDB entry:
5CEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CEE entry

There is 1 chain in PDB entry 5CEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ARG 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5CEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
31 36Right-handed alpha
Helix 3
AA3
A
40 50Right-handed alpha
Helix 4
AA4
A
53 58Right-handed alpha
Helix 5
AA5
A
59 61Right-handed 310
Helix 6
AA6
A
79 100Right-handed alpha
Helix 7
AA7
A
112 123Right-handed alpha
Helix 8
AA8
A
124 127Right-handed 310
Helix 9
AA9
A
138 151Right-handed alpha
Helix 10
AB1
A
158 178Right-handed alpha
Helix 11
AB2
A
193 205Right-handed alpha
Helix 12
AB3
A
228 238Right-handed alpha
Helix 13
AB4
A
246 252Right-handed alpha
Helix 14
AB5
A
267 274Right-handed alpha
Helix 15
AB6
A
291 299Right-handed alpha
Helix 16
AB7
A
315 318Right-handed 310
Helix 17
AB8
A
319 330Right-handed alpha
Helix 18
AB9
A
336 349Right-handed alpha
Helix 19
AC1
A
368 386Right-handed alpha
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There are 2 sheets in PDB entry 5CEE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
63 68parallel
Strand 3
A
129 133parallel
Strand 4
A
155 157parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
210 215anti-parallel
Strand 3
A
186 190parallel
Strand 4
A
256 259parallel
Strand 5
A
278 282parallel
Strand 6
A
300 305parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il