Analysis of interatomic Contacts of Structural Units in PDB entry:
5CER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CER entry

There are 5 chains in PDB entry 5CER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 26	ALA 426
B	LYS 28	LYS 220
C	MET 26	ALA 426
D	LYS 28	LYS 220
E	MET 26	ASP 136

There are145 helices in PDB entry 5CER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	73	Right-handed alpha
Helix 2	AA2	A	105	119	Right-handed alpha
Helix 3	AA3	A	154	169	Right-handed alpha
Helix 4	AA4	A	175	189	Right-handed alpha
Helix 5	AA5	A	208	212	Right-handed 310
Helix 6	AA6	A	227	239	Right-handed alpha
Helix 7	AA7	A	240	251	Right-handed alpha
Helix 8	AA8	A	252	265	Right-handed alpha
Helix 9	AA9	A	294	312	Right-handed alpha
Helix 10	AB1	A	315	319	Right-handed 310
Helix 11	AB2	A	381	401	Right-handed alpha
Helix 12	AB3	B	30	40	Right-handed alpha
Helix 13	AB4	B	41	52	Right-handed alpha
Helix 14	AB5	B	65	73	Right-handed alpha
Helix 15	AB6	B	75	85	Right-handed alpha
Helix 16	AB7	B	98	106	Right-handed alpha
Helix 17	AB8	B	108	118	Right-handed alpha
Helix 18	AB9	B	133	142	Right-handed alpha
Helix 19	AC1	B	142	153	Right-handed alpha
Helix 20	AC2	B	154	159	Right-handed 310
Helix 21	AC3	B	166	175	Right-handed alpha
Helix 22	AC4	B	176	186	Right-handed alpha
Helix 23	AC5	B	199	207	Right-handed alpha
Helix 24	AC6	B	209	219	Right-handed alpha
Helix 25	AC7	C	59	73	Right-handed alpha
Helix 26	AC8	C	105	119	Right-handed alpha
Helix 27	AC9	C	154	169	Right-handed alpha
Helix 28	AD1	C	175	189	Right-handed alpha
Helix 29	AD2	C	208	212	Right-handed 310
Helix 30	AD3	C	227	239	Right-handed alpha
Helix 31	AD4	C	240	251	Right-handed alpha
Helix 32	AD5	C	252	266	Right-handed alpha
Helix 33	AD6	C	295	312	Right-handed alpha
Helix 34	AD7	C	315	319	Right-handed 310
Helix 35	AD8	C	335	339	Right-handed 310
Helix 36	AD9	C	381	401	Right-handed alpha
Helix 37	AE1	D	30	40	Right-handed alpha
Helix 38	AE2	D	41	51	Right-handed alpha
Helix 39	AE3	D	65	73	Right-handed alpha
Helix 40	AE4	D	75	84	Right-handed alpha
Helix 41	AE5	D	98	106	Right-handed alpha
Helix 42	AE6	D	108	118	Right-handed alpha
Helix 43	AE7	D	133	142	Right-handed alpha
Helix 44	AE8	D	142	153	Right-handed alpha
Helix 45	AE9	D	154	159	Right-handed 310
Helix 46	AF1	D	166	175	Right-handed alpha
Helix 47	AF2	D	176	186	Right-handed alpha
Helix 48	AF3	D	199	207	Right-handed alpha
Helix 49	AF4	D	209	219	Right-handed alpha
Helix 50	AF5	E	59	73	Right-handed alpha
Helix 51	AF6	E	105	119	Right-handed alpha
Helix 52	AF7	E	154	169	Right-handed alpha
Helix 53	AF8	E	175	189	Right-handed alpha
Helix 54	AF9	E	208	212	Right-handed 310
Helix 55	AG1	E	227	239	Right-handed alpha
Helix 56	AG2	E	240	252	Right-handed alpha
Helix 57	AG3	E	252	265	Right-handed alpha
Helix 58	AG4	E	295	312	Right-handed alpha
Helix 59	AG5	E	315	319	Right-handed 310
Helix 60	AG6	E	381	401	Right-handed alpha
Helix 61	AG7	F	30	40	Right-handed alpha
Helix 62	AG8	F	41	52	Right-handed alpha
Helix 63	AG9	F	65	73	Right-handed alpha
Helix 64	AH1	F	75	84	Right-handed alpha
Helix 65	AH2	F	98	106	Right-handed alpha
Helix 66	AH3	F	108	118	Right-handed alpha
Helix 67	AH4	F	133	142	Right-handed alpha
Helix 68	AH5	F	142	153	Right-handed alpha
Helix 69	AH6	F	154	159	Right-handed 310
Helix 70	AH7	F	166	175	Right-handed alpha
Helix 71	AH8	F	176	186	Right-handed alpha
Helix 72	AH9	F	199	207	Right-handed alpha
Helix 73	AI1	F	209	219	Right-handed alpha
Helix 74	AI2	G	59	73	Right-handed alpha
Helix 75	AI3	G	105	119	Right-handed alpha
Helix 76	AI4	G	154	169	Right-handed alpha
Helix 77	AI5	G	175	189	Right-handed alpha
Helix 78	AI6	G	208	212	Right-handed 310
Helix 79	AI7	G	227	239	Right-handed alpha
Helix 80	AI8	G	240	251	Right-handed alpha
Helix 81	AI9	G	252	265	Right-handed alpha
Helix 82	AJ1	G	295	312	Right-handed alpha
Helix 83	AJ2	G	315	319	Right-handed 310
Helix 84	AJ3	G	381	401	Right-handed alpha
Helix 85	AJ4	H	30	40	Right-handed alpha
Helix 86	AJ5	H	41	52	Right-handed alpha
Helix 87	AJ6	H	65	73	Right-handed alpha
Helix 88	AJ7	H	75	84	Right-handed alpha
Helix 89	AJ8	H	98	106	Right-handed alpha
Helix 90	AJ9	H	108	118	Right-handed alpha
Helix 91	AK1	H	133	142	Right-handed alpha
Helix 92	AK2	H	142	153	Right-handed alpha
Helix 93	AK3	H	154	159	Right-handed 310
Helix 94	AK4	H	166	175	Right-handed alpha
Helix 95	AK5	H	176	186	Right-handed alpha
Helix 96	AK6	H	199	207	Right-handed alpha
Helix 97	AK7	H	209	219	Right-handed alpha
Helix 98	AK8	I	59	73	Right-handed alpha
Helix 99	AK9	I	105	119	Right-handed alpha
Helix 100	AL1	I	154	169	Right-handed alpha
Helix 101	AL2	I	175	189	Right-handed alpha
Helix 102	AL3	I	208	212	Right-handed 310
Helix 103	AL4	I	227	239	Right-handed alpha
Helix 104	AL5	I	240	251	Right-handed alpha
Helix 105	AL6	I	252	265	Right-handed alpha
Helix 106	AL7	I	294	312	Right-handed alpha
Helix 107	AL8	I	315	319	Right-handed 310
Helix 108	AL9	I	381	401	Right-handed alpha
Helix 109	AM1	J	30	40	Right-handed alpha
Helix 110	AM2	J	41	51	Right-handed alpha
Helix 111	AM3	J	65	73	Right-handed alpha
Helix 112	AM4	J	75	84	Right-handed alpha
Helix 113	AM5	J	98	106	Right-handed alpha
Helix 114	AM6	J	108	118	Right-handed alpha
Helix 115	AM7	J	133	142	Right-handed alpha
Helix 116	AM8	J	142	153	Right-handed alpha
Helix 117	AM9	J	154	159	Right-handed 310
Helix 118	AN1	J	166	175	Right-handed alpha
Helix 119	AN2	J	176	186	Right-handed alpha
Helix 120	AN3	J	199	207	Right-handed alpha
Helix 121	AN4	J	209	219	Right-handed alpha
Helix 122	AN5	K	59	73	Right-handed alpha
Helix 123	AN6	K	105	119	Right-handed alpha
Helix 124	AN7	K	154	169	Right-handed alpha
Helix 125	AN8	K	175	189	Right-handed alpha
Helix 126	AN9	K	208	212	Right-handed 310
Helix 127	AO1	K	227	239	Right-handed alpha
Helix 128	AO2	K	240	251	Right-handed alpha
Helix 129	AO3	K	252	265	Right-handed alpha
Helix 130	AO4	K	295	312	Right-handed alpha
Helix 131	AO5	K	315	319	Right-handed 310
Helix 132	AO6	K	381	401	Right-handed alpha
Helix 133	AO7	L	30	40	Right-handed alpha
Helix 134	AO8	L	41	52	Right-handed alpha
Helix 135	AO9	L	65	73	Right-handed alpha
Helix 136	AP1	L	75	85	Right-handed alpha
Helix 137	AP2	L	98	106	Right-handed alpha
Helix 138	AP3	L	108	118	Right-handed alpha
Helix 139	AP4	L	133	142	Right-handed alpha
Helix 140	AP5	L	142	153	Right-handed alpha
Helix 141	AP6	L	154	159	Right-handed 310
Helix 142	AP7	L	166	175	Right-handed alpha
Helix 143	AP8	L	176	186	Right-handed alpha
Helix 144	AP9	L	199	207	Right-handed alpha
Helix 145	AQ1	L	209	219	Right-handed alpha

There are 18 sheets in PDB entry 5CER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	28	36	anti-parallel
Strand 3	A	364	373	anti-parallel
Strand 4	A	352	361	anti-parallel
Strand 5	A	342	349	anti-parallel
Strand 6	A	321	322	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	292	293	anti-parallel
Strand 3	A	272	273	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	200	206	first strand
Strand 2	A	123	129	parallel
Strand 3	A	92	97	parallel
Strand 4	A	79	86	anti-parallel
Strand 5	A	219	224	anti-parallel
Strand 6	A	424	425	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	28	36	anti-parallel
Strand 3	C	364	373	anti-parallel
Strand 4	C	352	361	anti-parallel
Strand 5	C	342	349	anti-parallel
Strand 6	C	321	322	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	292	294	anti-parallel
Strand 3	C	272	273	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	206	first strand
Strand 2	C	123	129	parallel
Strand 3	C	92	97	parallel
Strand 4	C	79	86	anti-parallel
Strand 5	C	219	224	anti-parallel
Strand 6	C	424	425	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	48	first strand
Strand 2	E	28	36	anti-parallel
Strand 3	E	364	373	anti-parallel
Strand 4	E	352	361	anti-parallel
Strand 5	E	342	349	anti-parallel
Strand 6	E	321	322	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	292	294	anti-parallel
Strand 3	E	272	273	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	200	206	first strand
Strand 2	E	123	129	parallel
Strand 3	E	92	97	parallel
Strand 4	E	79	86	anti-parallel
Strand 5	E	219	224	anti-parallel
Strand 6	E	424	425	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	48	first strand
Strand 2	G	28	36	anti-parallel
Strand 3	G	364	373	anti-parallel
Strand 4	G	352	361	anti-parallel
Strand 5	G	342	349	anti-parallel
Strand 6	G	321	322	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	292	294	anti-parallel
Strand 3	G	272	273	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	206	first strand
Strand 2	G	123	129	parallel
Strand 3	G	92	97	parallel
Strand 4	G	79	86	anti-parallel
Strand 5	G	219	224	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	48	first strand
Strand 2	I	28	36	anti-parallel
Strand 3	I	364	373	anti-parallel
Strand 4	I	352	361	anti-parallel
Strand 5	I	342	349	anti-parallel
Strand 6	I	321	322	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	54	55	first strand
Strand 2	I	292	293	anti-parallel
Strand 3	I	272	273	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	200	206	first strand
Strand 2	I	123	129	parallel
Strand 3	I	92	97	parallel
Strand 4	I	79	86	anti-parallel
Strand 5	I	219	224	anti-parallel
Strand 6	I	424	425	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	48	first strand
Strand 2	K	28	36	anti-parallel
Strand 3	K	364	373	anti-parallel
Strand 4	K	352	361	anti-parallel
Strand 5	K	342	349	anti-parallel
Strand 6	K	321	322	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	55	first strand
Strand 2	K	292	294	anti-parallel
Strand 3	K	272	273	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	200	206	first strand
Strand 2	K	123	129	parallel
Strand 3	K	92	97	parallel
Strand 4	K	79	86	anti-parallel
Strand 5	K	219	224	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CER

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CER