Analysis of interatomic Contacts of Structural Units in PDB entry:
5CET


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CET entry

There is 1 chain in PDB entry 5CET (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15PRO 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5CET. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
45 62Right-handed alpha
Helix 3
AA3
A
77 83Right-handed 310
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
91 95Right-handed 310
Helix 6
AA6
A
109 122Right-handed 310
Helix 7
AA7
A
150 163Right-handed alpha
Helix 8
AA8
A
167 182Right-handed alpha
Helix 9
AA9
A
189 203Right-handed alpha
Helix 10
AB1
A
205 215Right-handed alpha
Helix 11
AB2
A
220 231Right-handed alpha
Helix 12
AB3
A
238 242Right-handed 310
Helix 13
AB4
A
250 257Right-handed alpha
Helix 14
AB5
A
258 264Right-handed alpha
Helix 15
AB6
A
265 270Right-handed alpha
Helix 16
AB7
A
300 307Right-handed alpha
Helix 17
AB8
A
323 337Right-handed alpha
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There are 2 sheets in PDB entry 5CET. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
35 40parallel
Strand 3
A
101 105parallel
Strand 4
A
126 130parallel
Strand 5
A
141 144parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
277 285parallel
Strand 4
A
288 295anti-parallel
Strand 5
A
315 321anti-parallel
Strand 6
A
310 312anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il