Analysis of interatomic Contacts of Structural Units in PDB entry:
5CF1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CF1 entry

There are 8 chains in PDB entry 5CF1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	VAL 143
B	ILE 5	VAL 143
E	ILE 5	VAL 143
F	ILE 5	GLU 141
C	ILE 5	ARG 148
D	ILE 5	LEU 145
G	ILE 5	VAL 143
H	ILE 5	GLU 141

There are 50 helices in PDB entry 5CF1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	20	Right-handed 310
Helix 2	AA2	A	22	34	Right-handed alpha
Helix 3	AA3	A	35	38	Right-handed 310
Helix 4	AA4	A	39	45	Right-handed alpha
Helix 5	AA5	A	63	77	Right-handed alpha
Helix 6	AA6	B	12	20	Right-handed 310
Helix 7	AA7	B	22	35	Right-handed alpha
Helix 8	AA8	B	36	38	Right-handed 310
Helix 9	AA9	B	39	44	Right-handed alpha
Helix 10	AB1	B	45	47	Right-handed 310
Helix 11	AB2	B	63	77	Right-handed alpha
Helix 12	AB3	B	138	143	Right-handed alpha
Helix 13	AB4	E	12	20	Right-handed 310
Helix 14	AB5	E	22	34	Right-handed alpha
Helix 15	AB6	E	35	38	Right-handed 310
Helix 16	AB7	E	39	44	Right-handed alpha
Helix 17	AB8	E	45	47	Right-handed 310
Helix 18	AB9	E	63	77	Right-handed alpha
Helix 19	AC1	E	139	143	Right-handed 310
Helix 20	AC2	F	12	20	Right-handed 310
Helix 21	AC3	F	22	34	Right-handed alpha
Helix 22	AC4	F	35	38	Right-handed 310
Helix 23	AC5	F	39	44	Right-handed alpha
Helix 24	AC6	F	45	47	Right-handed 310
Helix 25	AC7	F	63	77	Right-handed alpha
Helix 26	AC8	C	12	20	Right-handed 310
Helix 27	AC9	C	22	34	Right-handed alpha
Helix 28	AD1	C	35	38	Right-handed 310
Helix 29	AD2	C	39	44	Right-handed alpha
Helix 30	AD3	C	45	47	Right-handed 310
Helix 31	AD4	C	63	77	Right-handed alpha
Helix 32	AD5	C	138	143	Right-handed alpha
Helix 33	AD6	D	12	20	Right-handed 310
Helix 34	AD7	D	22	35	Right-handed alpha
Helix 35	AD8	D	36	38	Right-handed 310
Helix 36	AD9	D	39	44	Right-handed alpha
Helix 37	AE1	D	45	47	Right-handed 310
Helix 38	AE2	D	63	77	Right-handed alpha
Helix 39	AE3	D	138	143	Right-handed alpha
Helix 40	AE4	G	12	20	Right-handed 310
Helix 41	AE5	G	22	35	Right-handed alpha
Helix 42	AE6	G	36	38	Right-handed 310
Helix 43	AE7	G	39	45	Right-handed alpha
Helix 44	AE8	G	63	77	Right-handed alpha
Helix 45	AE9	H	12	20	Right-handed 310
Helix 46	AF1	H	22	34	Right-handed alpha
Helix 47	AF2	H	35	38	Right-handed 310
Helix 48	AF3	H	39	44	Right-handed alpha
Helix 49	AF4	H	45	47	Right-handed 310
Helix 50	AF5	H	63	77	Right-handed alpha

There are 8 sheets in PDB entry 5CF1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	52	55	anti-parallel
Strand 3	A	126	133	parallel
Strand 4	A	111	123	anti-parallel
Strand 5	A	94	105	anti-parallel
Strand 6	A	78	91	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	52	55	anti-parallel
Strand 3	B	126	134	parallel
Strand 4	B	111	123	anti-parallel
Strand 5	B	94	105	anti-parallel
Strand 6	B	78	91	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	62	first strand
Strand 2	E	52	55	anti-parallel
Strand 3	E	126	133	parallel
Strand 4	E	111	123	anti-parallel
Strand 5	E	94	105	anti-parallel
Strand 6	E	78	91	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	62	first strand
Strand 2	F	52	55	anti-parallel
Strand 3	F	126	133	parallel
Strand 4	F	111	123	anti-parallel
Strand 5	F	94	105	anti-parallel
Strand 6	F	78	91	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	52	55	anti-parallel
Strand 3	C	126	133	parallel
Strand 4	C	111	123	anti-parallel
Strand 5	C	94	105	anti-parallel
Strand 6	C	78	91	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	52	55	anti-parallel
Strand 3	D	126	133	parallel
Strand 4	D	111	123	anti-parallel
Strand 5	D	94	105	anti-parallel
Strand 6	D	78	91	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	52	55	anti-parallel
Strand 3	G	126	133	parallel
Strand 4	G	111	123	anti-parallel
Strand 5	G	94	105	anti-parallel
Strand 6	G	78	91	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	62	first strand
Strand 2	H	52	55	anti-parallel
Strand 3	H	126	133	parallel
Strand 4	H	111	123	anti-parallel
Strand 5	H	94	105	anti-parallel
Strand 6	H	78	91	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CF1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CF1